miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12859 3' -61.5 NC_003387.1 + 45659 0.66 0.437628
Target:  5'- cCGUCAGaUCCCgccgcagCG-CCCGCUUGaCGUc -3'
miRNA:   3'- cGCGGUC-AGGGa------GCuGGGCGAGC-GCG- -5'
12859 3' -61.5 NC_003387.1 + 42400 0.66 0.437628
Target:  5'- aCGCCGcggcugauUCCCUUG-CCCGCguccuggccugCGCGCu -3'
miRNA:   3'- cGCGGUc-------AGGGAGCuGGGCGa----------GCGCG- -5'
12859 3' -61.5 NC_003387.1 + 23079 0.66 0.437628
Target:  5'- aGCaGCCGGUUaCUCG-CgCCG-UCGCGCg -3'
miRNA:   3'- -CG-CGGUCAGgGAGCuG-GGCgAGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 46174 0.66 0.437628
Target:  5'- uGCGCCGuGUCCCggcUCGcauguAUCUGCa-GCGCg -3'
miRNA:   3'- -CGCGGU-CAGGG---AGC-----UGGGCGagCGCG- -5'
12859 3' -61.5 NC_003387.1 + 36752 0.66 0.437628
Target:  5'- aGCGCCugggcGUCaCCgucagCGACCgGCacUCgGCGCu -3'
miRNA:   3'- -CGCGGu----CAG-GGa----GCUGGgCG--AG-CGCG- -5'
12859 3' -61.5 NC_003387.1 + 45202 0.66 0.428454
Target:  5'- uGC-CCGG-CCCguUCGACCCGCggccgaUCGUGg -3'
miRNA:   3'- -CGcGGUCaGGG--AGCUGGGCG------AGCGCg -5'
12859 3' -61.5 NC_003387.1 + 38433 0.66 0.428454
Target:  5'- uGCGCCGcUUUUuauagUCGACgCGCUCGgGCu -3'
miRNA:   3'- -CGCGGUcAGGG-----AGCUGgGCGAGCgCG- -5'
12859 3' -61.5 NC_003387.1 + 526 0.66 0.428454
Target:  5'- aGCgGCCugcucgacagcGUCCugCUCGACCUGCUCGacaGUg -3'
miRNA:   3'- -CG-CGGu----------CAGG--GAGCUGGGCGAGCg--CG- -5'
12859 3' -61.5 NC_003387.1 + 51900 0.66 0.428454
Target:  5'- cGCGUaCAGgCCgUCGuCgCGCUuCGCGCa -3'
miRNA:   3'- -CGCG-GUCaGGgAGCuGgGCGA-GCGCG- -5'
12859 3' -61.5 NC_003387.1 + 49028 0.66 0.427543
Target:  5'- gGCGUCGGUgaugaaccgcagcCCCUCGGCCuCGgUCaggcCGCu -3'
miRNA:   3'- -CGCGGUCA-------------GGGAGCUGG-GCgAGc---GCG- -5'
12859 3' -61.5 NC_003387.1 + 8064 0.66 0.426633
Target:  5'- cCGgCAGcCCCUCGgccaggaucgccgagGCCgcggccagggccacaCGCUCGCGCc -3'
miRNA:   3'- cGCgGUCaGGGAGC---------------UGG---------------GCGAGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 28236 0.66 0.423005
Target:  5'- cCGCCGGUCggCCagGACgCGCagcagguucagcaccUCGCGCu -3'
miRNA:   3'- cGCGGUCAG--GGagCUGgGCG---------------AGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 14695 0.66 0.419394
Target:  5'- gGCGCC-GUCgCCgCGAUCCGUUgCgGUGCa -3'
miRNA:   3'- -CGCGGuCAG-GGaGCUGGGCGA-G-CGCG- -5'
12859 3' -61.5 NC_003387.1 + 30906 0.66 0.419394
Target:  5'- aGCGUUGGUCgCCaCGGCgUCGCUCGCcgaGCu -3'
miRNA:   3'- -CGCGGUCAG-GGaGCUG-GGCGAGCG---CG- -5'
12859 3' -61.5 NC_003387.1 + 22929 0.66 0.410452
Target:  5'- aCGCUAGU-CCUCGAUCgGCaUGCGg -3'
miRNA:   3'- cGCGGUCAgGGAGCUGGgCGaGCGCg -5'
12859 3' -61.5 NC_003387.1 + 21997 0.66 0.410452
Target:  5'- -aGCCGGgucaccugCCCggcugagCGcCCCGCagGCGCa -3'
miRNA:   3'- cgCGGUCa-------GGGa------GCuGGGCGagCGCG- -5'
12859 3' -61.5 NC_003387.1 + 31131 0.66 0.410452
Target:  5'- aGCGCCGcGUCggCCUCG-CUgaUGC-CGCGCg -3'
miRNA:   3'- -CGCGGU-CAG--GGAGCuGG--GCGaGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 8174 0.66 0.410452
Target:  5'- -gGCCAcUUCCU-GAUCCGCgUGCGCg -3'
miRNA:   3'- cgCGGUcAGGGAgCUGGGCGaGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 29323 0.66 0.410452
Target:  5'- aGCGCCAGg-CCgcgcUGAaagCCGC-CGCGCg -3'
miRNA:   3'- -CGCGGUCagGGa---GCUg--GGCGaGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 8406 0.66 0.410452
Target:  5'- gGUGUCGGggCCUCG-CCgGUgCGCGCg -3'
miRNA:   3'- -CGCGGUCagGGAGCuGGgCGaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.