miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12859 3' -61.5 NC_003387.1 + 42926 0.81 0.037613
Target:  5'- aGCGCCGGUCgCUCGACaacaUGgUCGCGCu -3'
miRNA:   3'- -CGCGGUCAGgGAGCUGg---GCgAGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 8510 0.7 0.23985
Target:  5'- -gGCaaguGUCCCUcgggcCGACCgGCUCGCGg -3'
miRNA:   3'- cgCGgu--CAGGGA-----GCUGGgCGAGCGCg -5'
12859 3' -61.5 NC_003387.1 + 28890 0.7 0.245856
Target:  5'- gGCGCCgAGUCCCggcgCGGCgcccucacguauCUGCU-GCGCg -3'
miRNA:   3'- -CGCGG-UCAGGGa---GCUG------------GGCGAgCGCG- -5'
12859 3' -61.5 NC_003387.1 + 46174 0.66 0.437628
Target:  5'- uGCGCCGuGUCCCggcUCGcauguAUCUGCa-GCGCg -3'
miRNA:   3'- -CGCGGU-CAGGG---AGC-----UGGGCGagCGCG- -5'
12859 3' -61.5 NC_003387.1 + 29382 0.74 0.129188
Target:  5'- gGCGCCGGUgacgaCCUCGaucucGCCCGC-CGgGCg -3'
miRNA:   3'- -CGCGGUCAg----GGAGC-----UGGGCGaGCgCG- -5'
12859 3' -61.5 NC_003387.1 + 13770 0.73 0.132666
Target:  5'- gGgGCCGGUCgguaUgGACCCGgUCGCGCu -3'
miRNA:   3'- -CgCGGUCAGgg--AgCUGGGCgAGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 8014 0.73 0.13988
Target:  5'- cGUGCCc-UCUgUCGGCCCGCUgguggcCGCGCg -3'
miRNA:   3'- -CGCGGucAGGgAGCUGGGCGA------GCGCG- -5'
12859 3' -61.5 NC_003387.1 + 39631 0.73 0.147453
Target:  5'- gGCGgCAuGagCCUCGACCCGgugUCGCGCa -3'
miRNA:   3'- -CGCgGU-CagGGAGCUGGGCg--AGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 32053 0.71 0.18633
Target:  5'- uCGCaAGUCUgUCGccgccgagcGCCCGUUCGCGCu -3'
miRNA:   3'- cGCGgUCAGGgAGC---------UGGGCGAGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 37098 0.7 0.233967
Target:  5'- uCGCCGugcgcgCCCUCGACgUGCUCGaCGUc -3'
miRNA:   3'- cGCGGUca----GGGAGCUGgGCGAGC-GCG- -5'
12859 3' -61.5 NC_003387.1 + 51338 0.7 0.217043
Target:  5'- aGCGCgA--CCC-CGACCCGCUgaGCGCc -3'
miRNA:   3'- -CGCGgUcaGGGaGCUGGGCGAg-CGCG- -5'
12859 3' -61.5 NC_003387.1 + 44292 0.72 0.172457
Target:  5'- uCGCCGuGUCUCUCGAUUacCUCGCGCg -3'
miRNA:   3'- cGCGGU-CAGGGAGCUGGgcGAGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 26120 0.77 0.075225
Target:  5'- uGCGCCAggucggcgcGUCCgUCG--CCGCUCGCGCg -3'
miRNA:   3'- -CGCGGU---------CAGGgAGCugGGCGAGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 30034 0.7 0.217043
Target:  5'- cCGCCAGcgccgCCgUCGACaCCGCccacgagCGCGCc -3'
miRNA:   3'- cGCGGUCa----GGgAGCUG-GGCGa------GCGCG- -5'
12859 3' -61.5 NC_003387.1 + 3635 0.75 0.104268
Target:  5'- cGUGCgGGUaucgCCgUCGACCgGCUCGUGCc -3'
miRNA:   3'- -CGCGgUCA----GGgAGCUGGgCGAGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 30155 0.72 0.168042
Target:  5'- -gGCCA--CCCUCGACCagGCcCGCGCg -3'
miRNA:   3'- cgCGGUcaGGGAGCUGGg-CGaGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 48243 0.7 0.228206
Target:  5'- cGCGcCCGGUCggCCgCGGCCagcaGCUCGgGCu -3'
miRNA:   3'- -CGC-GGUCAG--GGaGCUGGg---CGAGCgCG- -5'
12859 3' -61.5 NC_003387.1 + 49814 0.7 0.245856
Target:  5'- -aGCCucgCCCgCGGCCUGC-CGCGCc -3'
miRNA:   3'- cgCGGucaGGGaGCUGGGCGaGCGCG- -5'
12859 3' -61.5 NC_003387.1 + 34518 0.75 0.110038
Target:  5'- gGCGCCgcgauccucGGgcugCCCgUCGACCCGCUCGaCGa -3'
miRNA:   3'- -CGCGG---------UCa---GGG-AGCUGGGCGAGC-GCg -5'
12859 3' -61.5 NC_003387.1 + 48811 0.73 0.13988
Target:  5'- gGCgGCCAucGUCCCgccggUCGugCUGCUCgGCGCg -3'
miRNA:   3'- -CG-CGGU--CAGGG-----AGCugGGCGAG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.