miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12859 5' -55.1 NC_003387.1 + 27453 0.66 0.746339
Target:  5'- -gGgUCGAGCGcacgcgcgacGUCGGCCGGAuaGCCg -3'
miRNA:   3'- caCgAGCUUGCcc--------UAGUCGGCCU--UGG- -5'
12859 5' -55.1 NC_003387.1 + 34759 0.66 0.746339
Target:  5'- aUGCUCagcgguUGGGAggaCAGCCgcGGGGCCu -3'
miRNA:   3'- cACGAGcuu---GCCCUa--GUCGG--CCUUGG- -5'
12859 5' -55.1 NC_003387.1 + 6898 0.66 0.746339
Target:  5'- -gGCgUCGucGCGGGccAUCAGCCgcGGGACa -3'
miRNA:   3'- caCG-AGCu-UGCCC--UAGUCGG--CCUUGg -5'
12859 5' -55.1 NC_003387.1 + 18882 0.66 0.746339
Target:  5'- -aGCUCGGGgucgaucaggcuCGGGAUCuugcccAGCgGGAugCc -3'
miRNA:   3'- caCGAGCUU------------GCCCUAG------UCGgCCUugG- -5'
12859 5' -55.1 NC_003387.1 + 48057 0.66 0.746339
Target:  5'- uUGCUUG-GCGGcGUCGGCCGcuuggcgccGGGCCu -3'
miRNA:   3'- cACGAGCuUGCCcUAGUCGGC---------CUUGG- -5'
12859 5' -55.1 NC_003387.1 + 23819 0.66 0.740074
Target:  5'- -gGCUCGGGCGGuGGcccggcgcccgcgccUaagccgccgCAGUCGGGGCCg -3'
miRNA:   3'- caCGAGCUUGCC-CU---------------A---------GUCGGCCUUGG- -5'
12859 5' -55.1 NC_003387.1 + 29378 0.66 0.735876
Target:  5'- uUGCUCGcgggugagcAGCGGG-UCAuccuGCaGGAACCg -3'
miRNA:   3'- cACGAGC---------UUGCCCuAGU----CGgCCUUGG- -5'
12859 5' -55.1 NC_003387.1 + 13176 0.66 0.735876
Target:  5'- -gGCUCGcgUGccauGAUCAGCCGGGcguaaaacGCCc -3'
miRNA:   3'- caCGAGCuuGCc---CUAGUCGGCCU--------UGG- -5'
12859 5' -55.1 NC_003387.1 + 10046 0.66 0.735875
Target:  5'- -cGC-CGAgggcGCGGuGUCGGCCGGuAUCa -3'
miRNA:   3'- caCGaGCU----UGCCcUAGUCGGCCuUGG- -5'
12859 5' -55.1 NC_003387.1 + 47015 0.66 0.735875
Target:  5'- gGUGCUCGAcuucauugGCGGcc-CGGCCGGGc-- -3'
miRNA:   3'- -CACGAGCU--------UGCCcuaGUCGGCCUugg -5'
12859 5' -55.1 NC_003387.1 + 48391 0.66 0.725308
Target:  5'- -cGCaagCGGGcCGGGcgCAGCCuGGGcaACCa -3'
miRNA:   3'- caCGa--GCUU-GCCCuaGUCGG-CCU--UGG- -5'
12859 5' -55.1 NC_003387.1 + 7383 0.66 0.714647
Target:  5'- -cGCcUGAGCugcacGGAUCGGCCGcGGCCg -3'
miRNA:   3'- caCGaGCUUGc----CCUAGUCGGCcUUGG- -5'
12859 5' -55.1 NC_003387.1 + 15875 0.66 0.703905
Target:  5'- cUGCUUGAG-GGcGGUCAcagcgccgccGCCGGGAUCu -3'
miRNA:   3'- cACGAGCUUgCC-CUAGU----------CGGCCUUGG- -5'
12859 5' -55.1 NC_003387.1 + 49848 0.66 0.693093
Target:  5'- cUGCUgcAGCaGGAUCAGCgGGGcgACCu -3'
miRNA:   3'- cACGAgcUUGcCCUAGUCGgCCU--UGG- -5'
12859 5' -55.1 NC_003387.1 + 17781 0.66 0.693093
Target:  5'- -aGCUUGcgcAGCGGca-CGGCCGGGAUCa -3'
miRNA:   3'- caCGAGC---UUGCCcuaGUCGGCCUUGG- -5'
12859 5' -55.1 NC_003387.1 + 18398 0.67 0.671304
Target:  5'- -gGCUgCG-ACGGG-UCGGCCGcGGGCa -3'
miRNA:   3'- caCGA-GCuUGCCCuAGUCGGC-CUUGg -5'
12859 5' -55.1 NC_003387.1 + 15991 0.67 0.659251
Target:  5'- -cGCUCGcaGACGGcGUCgaGGCCGGGcagcucgACCg -3'
miRNA:   3'- caCGAGC--UUGCCcUAG--UCGGCCU-------UGG- -5'
12859 5' -55.1 NC_003387.1 + 52611 0.67 0.649367
Target:  5'- -cGCaUCGAgGCGGGcgcgcAUCAGCuCGGggUCc -3'
miRNA:   3'- caCG-AGCU-UGCCC-----UAGUCG-GCCuuGG- -5'
12859 5' -55.1 NC_003387.1 + 6851 0.67 0.649367
Target:  5'- -cGCUCGGccGCGGcGcgCAGCCGcAGCa -3'
miRNA:   3'- caCGAGCU--UGCC-CuaGUCGGCcUUGg -5'
12859 5' -55.1 NC_003387.1 + 3237 0.67 0.638369
Target:  5'- -cGC-CGGGCGGGcgCaccGGCCGaAACCa -3'
miRNA:   3'- caCGaGCUUGCCCuaG---UCGGCcUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.