Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12859 | 5' | -55.1 | NC_003387.1 | + | 1104 | 0.7 | 0.487851 |
Target: 5'- gGUGCccgCGAgcGCGGGuUCGGCCGuGGguucGCCg -3' miRNA: 3'- -CACGa--GCU--UGCCCuAGUCGGC-CU----UGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 2710 | 0.69 | 0.540254 |
Target: 5'- uGUGCUCGGcgacGCGGG--CGGCgGGcaGGCCa -3' miRNA: 3'- -CACGAGCU----UGCCCuaGUCGgCC--UUGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 3237 | 0.67 | 0.638369 |
Target: 5'- -cGC-CGGGCGGGcgCaccGGCCGaAACCa -3' miRNA: 3'- caCGaGCUUGCCCuaG---UCGGCcUUGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 3397 | 0.68 | 0.58349 |
Target: 5'- -aGCUUGcGCGcGAUCAuGCuCGGGGCCg -3' miRNA: 3'- caCGAGCuUGCcCUAGU-CG-GCCUUGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 6851 | 0.67 | 0.649367 |
Target: 5'- -cGCUCGGccGCGGcGcgCAGCCGcAGCa -3' miRNA: 3'- caCGAGCU--UGCC-CuaGUCGGCcUUGg -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 6898 | 0.66 | 0.746339 |
Target: 5'- -gGCgUCGucGCGGGccAUCAGCCgcGGGACa -3' miRNA: 3'- caCG-AGCu-UGCCC--UAGUCGG--CCUUGg -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 7383 | 0.66 | 0.714647 |
Target: 5'- -cGCcUGAGCugcacGGAUCGGCCGcGGCCg -3' miRNA: 3'- caCGaGCUUGc----CCUAGUCGGCcUUGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 9125 | 1.12 | 0.000629 |
Target: 5'- uGUGCUCGAACGGGAUCAGCCGGAACCg -3' miRNA: 3'- -CACGAGCUUGCCCUAGUCGGCCUUGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 10046 | 0.66 | 0.735875 |
Target: 5'- -cGC-CGAgggcGCGGuGUCGGCCGGuAUCa -3' miRNA: 3'- caCGaGCU----UGCCcUAGUCGGCCuUGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 13176 | 0.66 | 0.735876 |
Target: 5'- -gGCUCGcgUGccauGAUCAGCCGGGcguaaaacGCCc -3' miRNA: 3'- caCGAGCuuGCc---CUAGUCGGCCU--------UGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 15875 | 0.66 | 0.703905 |
Target: 5'- cUGCUUGAG-GGcGGUCAcagcgccgccGCCGGGAUCu -3' miRNA: 3'- cACGAGCUUgCC-CUAGU----------CGGCCUUGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 15991 | 0.67 | 0.659251 |
Target: 5'- -cGCUCGcaGACGGcGUCgaGGCCGGGcagcucgACCg -3' miRNA: 3'- caCGAGC--UUGCCcUAG--UCGGCCU-------UGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 17512 | 0.7 | 0.46756 |
Target: 5'- aGUGCUCGGccagcaugcgcaGCGGc-UCGGCCGGuauCCg -3' miRNA: 3'- -CACGAGCU------------UGCCcuAGUCGGCCuu-GG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 17662 | 0.69 | 0.550975 |
Target: 5'- gGUGCUCGuacuCGGuuGUCGGCUGGAcguCCu -3' miRNA: 3'- -CACGAGCuu--GCCc-UAGUCGGCCUu--GG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 17781 | 0.66 | 0.693093 |
Target: 5'- -aGCUUGcgcAGCGGca-CGGCCGGGAUCa -3' miRNA: 3'- caCGAGC---UUGCCcuaGUCGGCCUUGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 18398 | 0.67 | 0.671304 |
Target: 5'- -gGCUgCG-ACGGG-UCGGCCGcGGGCa -3' miRNA: 3'- caCGA-GCuUGCCCuAGUCGGC-CUUGg -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 18465 | 0.68 | 0.58349 |
Target: 5'- -cGCcCGAcuCGGcGAUCAGCCGGucgagcGCCc -3' miRNA: 3'- caCGaGCUu-GCC-CUAGUCGGCCu-----UGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 18882 | 0.66 | 0.746339 |
Target: 5'- -aGCUCGGGgucgaucaggcuCGGGAUCuugcccAGCgGGAugCc -3' miRNA: 3'- caCGAGCUU------------GCCCUAG------UCGgCCUugG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 21934 | 0.69 | 0.561759 |
Target: 5'- gGUGCUCGGcgGCGGGggCGGCggcaggcgucugCGGcGCUg -3' miRNA: 3'- -CACGAGCU--UGCCCuaGUCG------------GCCuUGG- -5' |
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12859 | 5' | -55.1 | NC_003387.1 | + | 23479 | 0.7 | 0.508547 |
Target: 5'- cUGCUCGAcCuu-GUCGGCCGGGAUCg -3' miRNA: 3'- cACGAGCUuGcccUAGUCGGCCUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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