miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12859 5' -55.1 NC_003387.1 + 29572 0.74 0.292859
Target:  5'- gGUGCUCGAcuucgaGGccGAggGGCCGGAGCCg -3'
miRNA:   3'- -CACGAGCUug----CC--CUagUCGGCCUUGG- -5'
12859 5' -55.1 NC_003387.1 + 47015 0.66 0.735875
Target:  5'- gGUGCUCGAcuucauugGCGGcc-CGGCCGGGc-- -3'
miRNA:   3'- -CACGAGCU--------UGCCcuaGUCGGCCUugg -5'
12859 5' -55.1 NC_003387.1 + 28852 0.68 0.58349
Target:  5'- -cGUUCGAcuGCGGG-UCGGaCUGGuACCg -3'
miRNA:   3'- caCGAGCU--UGCCCuAGUC-GGCCuUGG- -5'
12859 5' -55.1 NC_003387.1 + 21934 0.69 0.561759
Target:  5'- gGUGCUCGGcgGCGGGggCGGCggcaggcgucugCGGcGCUg -3'
miRNA:   3'- -CACGAGCU--UGCCCuaGUCG------------GCCuUGG- -5'
12859 5' -55.1 NC_003387.1 + 37117 0.69 0.529605
Target:  5'- cGUGCUCG-ACG---UCGGCCGG-GCCg -3'
miRNA:   3'- -CACGAGCuUGCccuAGUCGGCCuUGG- -5'
12859 5' -55.1 NC_003387.1 + 1104 0.7 0.487851
Target:  5'- gGUGCccgCGAgcGCGGGuUCGGCCGuGGguucGCCg -3'
miRNA:   3'- -CACGa--GCU--UGCCCuAGUCGGC-CU----UGG- -5'
12859 5' -55.1 NC_003387.1 + 23819 0.66 0.740074
Target:  5'- -gGCUCGGGCGGuGGcccggcgcccgcgccUaagccgccgCAGUCGGGGCCg -3'
miRNA:   3'- caCGAGCUUGCC-CU---------------A---------GUCGGCCUUGG- -5'
12859 5' -55.1 NC_003387.1 + 48391 0.66 0.725308
Target:  5'- -cGCaagCGGGcCGGGcgCAGCCuGGGcaACCa -3'
miRNA:   3'- caCGa--GCUU-GCCCuaGUCGG-CCU--UGG- -5'
12859 5' -55.1 NC_003387.1 + 2710 0.69 0.540254
Target:  5'- uGUGCUCGGcgacGCGGG--CGGCgGGcaGGCCa -3'
miRNA:   3'- -CACGAGCU----UGCCCuaGUCGgCC--UUGG- -5'
12859 5' -55.1 NC_003387.1 + 30709 0.7 0.467559
Target:  5'- cGUGCgccuGCGGGGcgcUCAGCCGGGcaggugACCc -3'
miRNA:   3'- -CACGagcuUGCCCU---AGUCGGCCU------UGG- -5'
12859 5' -55.1 NC_003387.1 + 39461 0.71 0.447711
Target:  5'- cUGUaCGAGCGGGcgCGGUgGGAaaucGCCa -3'
miRNA:   3'- cACGaGCUUGCCCuaGUCGgCCU----UGG- -5'
12859 5' -55.1 NC_003387.1 + 34759 0.66 0.746339
Target:  5'- aUGCUCagcgguUGGGAggaCAGCCgcGGGGCCu -3'
miRNA:   3'- cACGAGcuu---GCCCUa--GUCGG--CCUUGG- -5'
12859 5' -55.1 NC_003387.1 + 43719 0.71 0.447711
Target:  5'- gGUGCUCG-ACGGcGG-CAuGCgGGAGCCc -3'
miRNA:   3'- -CACGAGCuUGCC-CUaGU-CGgCCUUGG- -5'
12859 5' -55.1 NC_003387.1 + 36147 0.67 0.638369
Target:  5'- -aGCccCGAcgaGGcGGUCGGCCGGAugCu -3'
miRNA:   3'- caCGa-GCUug-CC-CUAGUCGGCCUugG- -5'
12859 5' -55.1 NC_003387.1 + 10046 0.66 0.735875
Target:  5'- -cGC-CGAgggcGCGGuGUCGGCCGGuAUCa -3'
miRNA:   3'- caCGaGCU----UGCCcUAGUCGGCCuUGG- -5'
12859 5' -55.1 NC_003387.1 + 3237 0.67 0.638369
Target:  5'- -cGC-CGGGCGGGcgCaccGGCCGaAACCa -3'
miRNA:   3'- caCGaGCUUGCCCuaG---UCGGCcUUGG- -5'
12859 5' -55.1 NC_003387.1 + 52611 0.67 0.649367
Target:  5'- -cGCaUCGAgGCGGGcgcgcAUCAGCuCGGggUCc -3'
miRNA:   3'- caCG-AGCU-UGCCC-----UAGUCG-GCCuuGG- -5'
12859 5' -55.1 NC_003387.1 + 6851 0.67 0.649367
Target:  5'- -cGCUCGGccGCGGcGcgCAGCCGcAGCa -3'
miRNA:   3'- caCGAGCU--UGCC-CuaGUCGGCcUUGg -5'
12859 5' -55.1 NC_003387.1 + 15991 0.67 0.659251
Target:  5'- -cGCUCGcaGACGGcGUCgaGGCCGGGcagcucgACCg -3'
miRNA:   3'- caCGAGC--UUGCCcUAG--UCGGCCU-------UGG- -5'
12859 5' -55.1 NC_003387.1 + 7383 0.66 0.714647
Target:  5'- -cGCcUGAGCugcacGGAUCGGCCGcGGCCg -3'
miRNA:   3'- caCGaGCUUGc----CCUAGUCGGCcUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.