miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1286 3' -51.1 NC_001317.1 + 16221 0.66 0.748123
Target:  5'- gUGGUGAGUgCCGgGUAGGUcAUGCgggGCa -3'
miRNA:   3'- -AUUACUUA-GGCgCGUCCAcUGUGa--CG- -5'
1286 3' -51.1 NC_001317.1 + 1819 0.67 0.701997
Target:  5'- ----cAAUCUgGCGCGauuuGGUGAUGCUGCg -3'
miRNA:   3'- auuacUUAGG-CGCGU----CCACUGUGACG- -5'
1286 3' -51.1 NC_001317.1 + 2412 0.67 0.678393
Target:  5'- -cAUGGAcuuugCCGCGCAGGcagaUGGCAUccGCa -3'
miRNA:   3'- auUACUUa----GGCGCGUCC----ACUGUGa-CG- -5'
1286 3' -51.1 NC_001317.1 + 8244 0.67 0.666506
Target:  5'- -uGUGAuggCCGUGCucGGGUugcuGugGCUGCa -3'
miRNA:   3'- auUACUua-GGCGCG--UCCA----CugUGACG- -5'
1286 3' -51.1 NC_001317.1 + 6112 0.69 0.571131
Target:  5'- cUGAUG-GUCguggUGCGCAGGaUGACAUUGUu -3'
miRNA:   3'- -AUUACuUAG----GCGCGUCC-ACUGUGACG- -5'
1286 3' -51.1 NC_001317.1 + 15032 0.69 0.558182
Target:  5'- ---cGAA-CCGCGCAGGUgcuggccGACACaaugGCu -3'
miRNA:   3'- auuaCUUaGGCGCGUCCA-------CUGUGa---CG- -5'
1286 3' -51.1 NC_001317.1 + 28259 0.69 0.547649
Target:  5'- --uUGAAUUCGcCGCAGuGcaUGAUGCUGCu -3'
miRNA:   3'- auuACUUAGGC-GCGUC-C--ACUGUGACG- -5'
1286 3' -51.1 NC_001317.1 + 9783 0.71 0.479356
Target:  5'- gUGGUGAcggaggucgAUaCCGUGCAGG-GGCugUGCc -3'
miRNA:   3'- -AUUACU---------UA-GGCGCGUCCaCUGugACG- -5'
1286 3' -51.1 NC_001317.1 + 3307 0.71 0.457513
Target:  5'- cAGUGGuaCCGCGCAGGacUGGCACa-- -3'
miRNA:   3'- aUUACUuaGGCGCGUCC--ACUGUGacg -5'
1286 3' -51.1 NC_001317.1 + 3920 0.73 0.330186
Target:  5'- ---cGAAUCgGCGUcgaGGGUGAUAcCUGCg -3'
miRNA:   3'- auuaCUUAGgCGCG---UCCACUGU-GACG- -5'
1286 3' -51.1 NC_001317.1 + 16143 0.73 0.330186
Target:  5'- --cUGAcgCCGCGCAGGguGC-CUGCg -3'
miRNA:   3'- auuACUuaGGCGCGUCCacUGuGACG- -5'
1286 3' -51.1 NC_001317.1 + 2069 0.74 0.304767
Target:  5'- cGGUGcggcuggCCuCGUAGGUGGCGCUGCg -3'
miRNA:   3'- aUUACuua----GGcGCGUCCACUGUGACG- -5'
1286 3' -51.1 NC_001317.1 + 8396 1.12 0.000706
Target:  5'- gUAAUGAAUCCGCGCAGGUGACACUGCg -3'
miRNA:   3'- -AUUACUUAGGCGCGUCCACUGUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.