Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1286 | 5' | -52.1 | NC_001317.1 | + | 8431 | 1.12 | 0.0005 |
Target: 5'- cUCGCAAAGGCAAGUGCAGAAGCCAGCc -3' miRNA: 3'- -AGCGUUUCCGUUCACGUCUUCGGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 29891 | 0.66 | 0.686197 |
Target: 5'- --uCAAAGGU--GUGCAG--GCCAGCg -3' miRNA: 3'- agcGUUUCCGuuCACGUCuuCGGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 14242 | 0.66 | 0.686197 |
Target: 5'- cCGCAAucgucGGCAuGGUcUGGAcAGCCAGCg -3' miRNA: 3'- aGCGUUu----CCGU-UCAcGUCU-UCGGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 16625 | 0.66 | 0.674378 |
Target: 5'- gCGCuugauAAGGCGAaacGC-GAGGCCGGUg -3' miRNA: 3'- aGCGu----UUCCGUUca-CGuCUUCGGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 12796 | 0.66 | 0.670822 |
Target: 5'- gCGCAaaAAGGCAuugugaggcugaguAGUGCGGcAGaCAGUa -3' miRNA: 3'- aGCGU--UUCCGU--------------UCACGUCuUCgGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 9449 | 0.66 | 0.661323 |
Target: 5'- -aGcCAAAGGCAgcgauagugcggcGGUGguGGAGuuuaCCGGCa -3' miRNA: 3'- agC-GUUUCCGU-------------UCACguCUUC----GGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 8118 | 0.66 | 0.650612 |
Target: 5'- gUCGCAAuaucuGGGCGucauuacCGGggGCCGGUu -3' miRNA: 3'- -AGCGUU-----UCCGUucac---GUCuuCGGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 9906 | 0.66 | 0.650612 |
Target: 5'- cUCGguGA-GCAGGUGCuGcuGCUGGCa -3' miRNA: 3'- -AGCguUUcCGUUCACGuCuuCGGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 21200 | 0.74 | 0.271573 |
Target: 5'- gUCcCAucuGGGGCAAGUGUugGGcGGCCAGCa -3' miRNA: 3'- -AGcGU---UUCCGUUCACG--UCuUCGGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 20186 | 0.71 | 0.402692 |
Target: 5'- gCGCGAGGGUGAGUauauggccGguGAGGCCGa- -3' miRNA: 3'- aGCGUUUCCGUUCA--------CguCUUCGGUcg -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 818 | 0.7 | 0.433321 |
Target: 5'- cCGC---GGCGGGUGUAuuuggccgguGAGGCCAGUa -3' miRNA: 3'- aGCGuuuCCGUUCACGU----------CUUCGGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 6433 | 0.67 | 0.602943 |
Target: 5'- aUGCAGAGGCGcuGGcGCAGuu-UCAGCg -3' miRNA: 3'- aGCGUUUCCGU--UCaCGUCuucGGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 9500 | 0.66 | 0.650612 |
Target: 5'- gCGCAuGGcGCGGGUGCAucAGUaCGGCc -3' miRNA: 3'- aGCGUuUC-CGUUCACGUcuUCG-GUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 18541 | 0.74 | 0.264173 |
Target: 5'- -aGCGGAcGCAucaaaGCAGAGGCCAGCg -3' miRNA: 3'- agCGUUUcCGUuca--CGUCUUCGGUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 3413 | 0.68 | 0.544086 |
Target: 5'- cCGCAAcaaGGGUGAGcGCaAGAAGCCGa- -3' miRNA: 3'- aGCGUU---UCCGUUCaCG-UCUUCGGUcg -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 4358 | 0.67 | 0.607701 |
Target: 5'- uUCGCAGugcGGCAgaauucgagauauucAGUGCcGAGGCUcGCc -3' miRNA: 3'- -AGCGUUu--CCGU---------------UCACGuCUUCGGuCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 24642 | 0.67 | 0.614846 |
Target: 5'- -aGCGAGGGCuucgcGGcGCAGuAGCuCGGCc -3' miRNA: 3'- agCGUUUCCGu----UCaCGUCuUCG-GUCG- -5' |
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1286 | 5' | -52.1 | NC_001317.1 | + | 16864 | 0.66 | 0.662512 |
Target: 5'- cUGCAGAGa-GAGUGCGGGuauuaauaccGGCCuGCa -3' miRNA: 3'- aGCGUUUCcgUUCACGUCU----------UCGGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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