miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12861 5' -62.5 NC_003387.1 + 39212 0.66 0.398917
Target:  5'- cCCCgCGGUCGGGcaGUgggagcggguaccggCGCCGggcgAGGCCGUc -3'
miRNA:   3'- -GGGaGCCGGUCC--UA---------------GCGGC----UCCGGCG- -5'
12861 5' -62.5 NC_003387.1 + 13568 0.66 0.395465
Target:  5'- gCCCgaucgaCGGgCAGGA-CGUCGGcuGGUCGCc -3'
miRNA:   3'- -GGGa-----GCCgGUCCUaGCGGCU--CCGGCG- -5'
12861 5' -62.5 NC_003387.1 + 10615 0.66 0.395465
Target:  5'- gCCUCGGUcaugCAGGAcgCGaCCGcGGCgGUg -3'
miRNA:   3'- gGGAGCCG----GUCCUa-GC-GGCuCCGgCG- -5'
12861 5' -62.5 NC_003387.1 + 20364 0.66 0.395465
Target:  5'- gCCUCGuGCgGGGGUugUGUCGuuuAGGCgGCg -3'
miRNA:   3'- gGGAGC-CGgUCCUA--GCGGC---UCCGgCG- -5'
12861 5' -62.5 NC_003387.1 + 50172 0.66 0.395465
Target:  5'- ---aCGGCgAGGAUCuGCCGcGGCgacCGCg -3'
miRNA:   3'- gggaGCCGgUCCUAG-CGGCuCCG---GCG- -5'
12861 5' -62.5 NC_003387.1 + 44911 0.66 0.395465
Target:  5'- aCCUCGGCCgccAGGcGUUGCagcucGGCCuGCa -3'
miRNA:   3'- gGGAGCCGG---UCC-UAGCGgcu--CCGG-CG- -5'
12861 5' -62.5 NC_003387.1 + 24536 0.66 0.392889
Target:  5'- aCCUUGGCgAGGGgccgagcgaaacugUCGCCGGGuuCGg -3'
miRNA:   3'- gGGAGCCGgUCCU--------------AGCGGCUCcgGCg -5'
12861 5' -62.5 NC_003387.1 + 21272 0.66 0.392889
Target:  5'- --gUCGGgCaAGGuggcgcaccgcgucGUCGUCGAGGCCGUc -3'
miRNA:   3'- gggAGCCgG-UCC--------------UAGCGGCUCCGGCG- -5'
12861 5' -62.5 NC_003387.1 + 22659 0.66 0.386919
Target:  5'- cCCCggCGGCCgucaGGGcgCGCuCGuGGGCgGUg -3'
miRNA:   3'- -GGGa-GCCGG----UCCuaGCG-GC-UCCGgCG- -5'
12861 5' -62.5 NC_003387.1 + 42203 0.66 0.378497
Target:  5'- aCC-CGGCCcGcAUCGCCGAG-CCGa -3'
miRNA:   3'- gGGaGCCGGuCcUAGCGGCUCcGGCg -5'
12861 5' -62.5 NC_003387.1 + 25174 0.66 0.378497
Target:  5'- -gCUCGGCgCGGuGGccccggCGCCGccGCCGCg -3'
miRNA:   3'- ggGAGCCG-GUC-CUa-----GCGGCucCGGCG- -5'
12861 5' -62.5 NC_003387.1 + 38481 0.66 0.378497
Target:  5'- aCCagUCGGCCc-GAUC-CCGAgcGGCCGUg -3'
miRNA:   3'- gGG--AGCCGGucCUAGcGGCU--CCGGCG- -5'
12861 5' -62.5 NC_003387.1 + 52583 0.66 0.378497
Target:  5'- -gCUCGGCgGcgcGGAUCG-CGAGGgcgaCCGCa -3'
miRNA:   3'- ggGAGCCGgU---CCUAGCgGCUCC----GGCG- -5'
12861 5' -62.5 NC_003387.1 + 9886 0.66 0.378497
Target:  5'- aCCUCGaucgccGCCAuGAUCGCCuc-GCCGCc -3'
miRNA:   3'- gGGAGC------CGGUcCUAGCGGcucCGGCG- -5'
12861 5' -62.5 NC_003387.1 + 9391 0.66 0.370198
Target:  5'- cCCCgaggCGGgCAagacGAUCGCCGAggagugGGCCGa -3'
miRNA:   3'- -GGGa---GCCgGUc---CUAGCGGCU------CCGGCg -5'
12861 5' -62.5 NC_003387.1 + 18584 0.66 0.370198
Target:  5'- aCCCagGcGUCAGGGUCGCCcgccucGGUgGCg -3'
miRNA:   3'- -GGGagC-CGGUCCUAGCGGcu----CCGgCG- -5'
12861 5' -62.5 NC_003387.1 + 49431 0.66 0.370198
Target:  5'- gCCCgagucggCGGCCgugucGGGGUCGUCGuccauuucGGCgGCc -3'
miRNA:   3'- -GGGa------GCCGG-----UCCUAGCGGCu-------CCGgCG- -5'
12861 5' -62.5 NC_003387.1 + 40252 0.66 0.370198
Target:  5'- -gCUCGgacGCCAGGccCGCgGccAGGCCGCc -3'
miRNA:   3'- ggGAGC---CGGUCCuaGCGgC--UCCGGCG- -5'
12861 5' -62.5 NC_003387.1 + 17183 0.66 0.369375
Target:  5'- gCCUgggCGGCgAcGGcgcgaaaGUgGCCGAGGCCGa -3'
miRNA:   3'- -GGGa--GCCGgU-CC-------UAgCGGCUCCGGCg -5'
12861 5' -62.5 NC_003387.1 + 25238 0.66 0.369375
Target:  5'- aCCUCGGCCGacauguGGAccggcuaUCcgGCCGAcGUCGCg -3'
miRNA:   3'- gGGAGCCGGU------CCU-------AG--CGGCUcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.