miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12862 3' -52 NC_003387.1 + 48819 0.66 0.874611
Target:  5'- aGCACCcagGCGGuCAGggucggGCAg--CGGCGc -3'
miRNA:   3'- -CGUGGaa-CGCC-GUCa-----CGUuuaGCUGC- -5'
12862 3' -52 NC_003387.1 + 2421 0.66 0.874611
Target:  5'- cCGCCUgggagaUGUGGCAGcGCAAccgcAUgGACGc -3'
miRNA:   3'- cGUGGA------ACGCCGUCaCGUU----UAgCUGC- -5'
12862 3' -52 NC_003387.1 + 26568 0.66 0.874611
Target:  5'- cGC-CCUUGCgGGCGGUGCcg---GGCa -3'
miRNA:   3'- -CGuGGAACG-CCGUCACGuuuagCUGc -5'
12862 3' -52 NC_003387.1 + 22617 0.66 0.874611
Target:  5'- gGC-CCUUGCGGCGGUacccGCc-GUUGAgGu -3'
miRNA:   3'- -CGuGGAACGCCGUCA----CGuuUAGCUgC- -5'
12862 3' -52 NC_003387.1 + 4905 0.66 0.873809
Target:  5'- -uGCCgggUGCGGUAGcUGCAcugcccgGcgCGGCGu -3'
miRNA:   3'- cgUGGa--ACGCCGUC-ACGU-------UuaGCUGC- -5'
12862 3' -52 NC_003387.1 + 25192 0.66 0.866471
Target:  5'- gGCGCCgccgccGCGGCAGcGCAucauGGUgcUGACGu -3'
miRNA:   3'- -CGUGGaa----CGCCGUCaCGU----UUA--GCUGC- -5'
12862 3' -52 NC_003387.1 + 49780 0.66 0.866471
Target:  5'- uUACCUgcgGUGGCugcuGGcGCAGuUCGACGa -3'
miRNA:   3'- cGUGGAa--CGCCG----UCaCGUUuAGCUGC- -5'
12862 3' -52 NC_003387.1 + 15407 0.66 0.861463
Target:  5'- cGCACCggcguaacuggcgGUGGCGGUGgAAcgCGAa- -3'
miRNA:   3'- -CGUGGaa-----------CGCCGUCACgUUuaGCUgc -5'
12862 3' -52 NC_003387.1 + 31036 0.66 0.858073
Target:  5'- uCGCCgagGCGGcCAGgGC--GUCGGCGa -3'
miRNA:   3'- cGUGGaa-CGCC-GUCaCGuuUAGCUGC- -5'
12862 3' -52 NC_003387.1 + 9022 0.66 0.858073
Target:  5'- aGCACCU---GGCGG-GCGccGUCGGCGa -3'
miRNA:   3'- -CGUGGAacgCCGUCaCGUu-UAGCUGC- -5'
12862 3' -52 NC_003387.1 + 43774 0.66 0.858073
Target:  5'- aGCACCUucaUGCgGGCGccGUGCA--UCG-CGg -3'
miRNA:   3'- -CGUGGA---ACG-CCGU--CACGUuuAGCuGC- -5'
12862 3' -52 NC_003387.1 + 6036 0.66 0.858073
Target:  5'- gGCACgaggUGCGGCAGggcgccggGCAGGuUCGAgCGc -3'
miRNA:   3'- -CGUGga--ACGCCGUCa-------CGUUU-AGCU-GC- -5'
12862 3' -52 NC_003387.1 + 16461 0.66 0.85722
Target:  5'- gGCuACCUUGagcauuuCGaGCAGggcaGCGGGUCGGCGu -3'
miRNA:   3'- -CG-UGGAAC-------GC-CGUCa---CGUUUAGCUGC- -5'
12862 3' -52 NC_003387.1 + 39698 0.66 0.849426
Target:  5'- cGCAgCgcgUGCaGCAGcgGCAGAUCGGg- -3'
miRNA:   3'- -CGUgGa--ACGcCGUCa-CGUUUAGCUgc -5'
12862 3' -52 NC_003387.1 + 48550 0.66 0.849426
Target:  5'- cGCGCCgaggucacgUGCcaGGC-GUGCA--UCGACGc -3'
miRNA:   3'- -CGUGGa--------ACG--CCGuCACGUuuAGCUGC- -5'
12862 3' -52 NC_003387.1 + 16102 0.66 0.849426
Target:  5'- gGCAUCgcgGCGGcCAGcagccGCGAGUCGaACGc -3'
miRNA:   3'- -CGUGGaa-CGCC-GUCa----CGUUUAGC-UGC- -5'
12862 3' -52 NC_003387.1 + 18223 0.66 0.841436
Target:  5'- gGCGCCgcaGCGGCGGgcguacucguaggccGCAuccgccgccauGUCGACGa -3'
miRNA:   3'- -CGUGGaa-CGCCGUCa--------------CGUu----------UAGCUGC- -5'
12862 3' -52 NC_003387.1 + 50672 0.66 0.840537
Target:  5'- gGCGCCgccaccGCGGcCAGcucgGCGAcggcggccGUCGGCGg -3'
miRNA:   3'- -CGUGGaa----CGCC-GUCa---CGUU--------UAGCUGC- -5'
12862 3' -52 NC_003387.1 + 51221 0.66 0.840537
Target:  5'- uGCACgUcggccGCGGCcuGGUGCucgacGUCGACGc -3'
miRNA:   3'- -CGUGgAa----CGCCG--UCACGuu---UAGCUGC- -5'
12862 3' -52 NC_003387.1 + 38797 0.67 0.831417
Target:  5'- -aGCCUcgGCGGCgucauGGUGCcGAUCGgGCGc -3'
miRNA:   3'- cgUGGAa-CGCCG-----UCACGuUUAGC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.