miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12862 5' -54.1 NC_003387.1 + 9038 0.66 0.810914
Target:  5'- cGUCGgCGAUCCACGCcAgGaUCGcGUCGc -3'
miRNA:   3'- -CAGCaGCUAGGUGUGcUgC-AGC-CAGU- -5'
12862 5' -54.1 NC_003387.1 + 1602 0.66 0.810914
Target:  5'- -aUGUCGcacggCCugGCGAUuUCGGUCGg -3'
miRNA:   3'- caGCAGCua---GGugUGCUGcAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 37904 0.66 0.801422
Target:  5'- gGUCGU-GAUCgUGCGCGcCGUgGGUCGg -3'
miRNA:   3'- -CAGCAgCUAG-GUGUGCuGCAgCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 14700 0.66 0.791755
Target:  5'- cGUCGccgCGAUCCguugcgguGCACGGCuugcugCGGUCGc -3'
miRNA:   3'- -CAGCa--GCUAGG--------UGUGCUGca----GCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 46947 0.66 0.781921
Target:  5'- -gUGUCGAUCCGCGgCGAgCG-CGGcCGg -3'
miRNA:   3'- caGCAGCUAGGUGU-GCU-GCaGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 34339 0.66 0.771933
Target:  5'- cGUCGcagcCGAUCgACGuCGACGU-GGUCGa -3'
miRNA:   3'- -CAGCa---GCUAGgUGU-GCUGCAgCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 30907 0.66 0.771933
Target:  5'- -gCGUUGGUCgC-CACGGCGUCGcUCGc -3'
miRNA:   3'- caGCAGCUAG-GuGUGCUGCAGCcAGU- -5'
12862 5' -54.1 NC_003387.1 + 1472 0.67 0.751537
Target:  5'- gGUCGUCGAgggCCaggGCGuCGACGUCGaG-CAc -3'
miRNA:   3'- -CAGCAGCUa--GG---UGU-GCUGCAGC-CaGU- -5'
12862 5' -54.1 NC_003387.1 + 37262 0.67 0.751537
Target:  5'- -gUGUCGG-CC-CGCGugG-CGGUCAa -3'
miRNA:   3'- caGCAGCUaGGuGUGCugCaGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 30252 0.67 0.751537
Target:  5'- gGUCGUCGGggUCgGCGcCGGgGUCGGgCAg -3'
miRNA:   3'- -CAGCAGCU--AGgUGU-GCUgCAGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 4779 0.67 0.741152
Target:  5'- uUCG-CGGcCCACACGGCGUCGu--- -3'
miRNA:   3'- cAGCaGCUaGGUGUGCUGCAGCcagu -5'
12862 5' -54.1 NC_003387.1 + 37309 0.67 0.730658
Target:  5'- gGUCGUCGA-CCGCGcCGACGUgccgUGGaCGa -3'
miRNA:   3'- -CAGCAGCUaGGUGU-GCUGCA----GCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 6157 0.67 0.730658
Target:  5'- gGUCGgcguagcCGAUCagcguCACGACGUCGGcCu -3'
miRNA:   3'- -CAGCa------GCUAGgu---GUGCUGCAGCCaGu -5'
12862 5' -54.1 NC_003387.1 + 756 0.67 0.729603
Target:  5'- --gGUCGG-CCACcgcggcaGCGACGUCGGgCAg -3'
miRNA:   3'- cagCAGCUaGGUG-------UGCUGCAGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 20500 0.67 0.720065
Target:  5'- cUCGUCGcgCUcgcgcaGCGCGGCGUCGcgcucGUCGg -3'
miRNA:   3'- cAGCAGCuaGG------UGUGCUGCAGC-----CAGU- -5'
12862 5' -54.1 NC_003387.1 + 17055 0.67 0.720065
Target:  5'- cGUCGUCGAgg-ACGCGAUcgaGUgGGUCGa -3'
miRNA:   3'- -CAGCAGCUaggUGUGCUG---CAgCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 24228 0.68 0.687812
Target:  5'- cGUCGUCGugguugCCGCcgACGACGUCGa--- -3'
miRNA:   3'- -CAGCAGCua----GGUG--UGCUGCAGCcagu -5'
12862 5' -54.1 NC_003387.1 + 8929 0.68 0.655079
Target:  5'- cUCGUCGAggaagCGgGCGACGcCGGUCc -3'
miRNA:   3'- cAGCAGCUag---GUgUGCUGCaGCCAGu -5'
12862 5' -54.1 NC_003387.1 + 50601 0.69 0.633134
Target:  5'- -aCGUCGG-CCGCugGgGCGUCGG-CGa -3'
miRNA:   3'- caGCAGCUaGGUGugC-UGCAGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 18389 0.69 0.633134
Target:  5'- -aCGUCGAUCgGCuGCGACGggUCGGcCGc -3'
miRNA:   3'- caGCAGCUAGgUG-UGCUGC--AGCCaGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.