miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12862 5' -54.1 NC_003387.1 + 7900 1.09 0.001636
Target:  5'- uGUCGUCGAUCCACACGACGUCGGUCAg -3'
miRNA:   3'- -CAGCAGCUAGGUGUGCUGCAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 44014 0.81 0.134191
Target:  5'- uGUCGUCGAgCgGCucguCGACGUCGGUCGg -3'
miRNA:   3'- -CAGCAGCUaGgUGu---GCUGCAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 39493 0.74 0.36105
Target:  5'- -cUGUCGGcCUGCuCGGCGUCGGUCAg -3'
miRNA:   3'- caGCAGCUaGGUGuGCUGCAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 26282 0.73 0.378415
Target:  5'- aUCG-CGAUCCACgGCGugagcugcuCGUCGGUCAc -3'
miRNA:   3'- cAGCaGCUAGGUG-UGCu--------GCAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 27454 0.73 0.387305
Target:  5'- --gGUCGAgcgCaCGCGCGACGUCGGcCGg -3'
miRNA:   3'- cagCAGCUa--G-GUGUGCUGCAGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 36651 0.73 0.396332
Target:  5'- uGUCGUCGAUCUGCcCGACGaccucgCGGaUCAu -3'
miRNA:   3'- -CAGCAGCUAGGUGuGCUGCa-----GCC-AGU- -5'
12862 5' -54.1 NC_003387.1 + 4425 0.72 0.473158
Target:  5'- uUCGUCGAggCGgGCGgcgaacucuGCGUCGGUCAu -3'
miRNA:   3'- cAGCAGCUagGUgUGC---------UGCAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 2061 0.71 0.514278
Target:  5'- gGUCGagaaUGGUCUGCGCGACG-CGGUCc -3'
miRNA:   3'- -CAGCa---GCUAGGUGUGCUGCaGCCAGu -5'
12862 5' -54.1 NC_003387.1 + 42792 0.71 0.514278
Target:  5'- aGUUGUUGAUCCGUAgGGCGUCGaUCAc -3'
miRNA:   3'- -CAGCAGCUAGGUGUgCUGCAGCcAGU- -5'
12862 5' -54.1 NC_003387.1 + 8347 0.71 0.52479
Target:  5'- cUCGUCGA-CCAC-CGGguCGUCGGUUg -3'
miRNA:   3'- cAGCAGCUaGGUGuGCU--GCAGCCAGu -5'
12862 5' -54.1 NC_003387.1 + 37551 0.71 0.52479
Target:  5'- cUCGUCGAUCaccuCGCGGCG-CGcGUCGa -3'
miRNA:   3'- cAGCAGCUAGgu--GUGCUGCaGC-CAGU- -5'
12862 5' -54.1 NC_003387.1 + 742 0.7 0.589308
Target:  5'- -cCGUCGGUgCGCGCGACGUgUGGcgCGa -3'
miRNA:   3'- caGCAGCUAgGUGUGCUGCA-GCCa-GU- -5'
12862 5' -54.1 NC_003387.1 + 14606 0.69 0.611185
Target:  5'- -gUGUCGGUCCACGUGuCGUaaaGGUCGc -3'
miRNA:   3'- caGCAGCUAGGUGUGCuGCAg--CCAGU- -5'
12862 5' -54.1 NC_003387.1 + 12986 0.69 0.611185
Target:  5'- gGUCGUCGAUaaucUCGCGCuGCGUCG-UCAg -3'
miRNA:   3'- -CAGCAGCUA----GGUGUGcUGCAGCcAGU- -5'
12862 5' -54.1 NC_003387.1 + 43568 0.69 0.611185
Target:  5'- cGUCGUCGcuGUaCUGCACGACGU-GGUUg -3'
miRNA:   3'- -CAGCAGC--UA-GGUGUGCUGCAgCCAGu -5'
12862 5' -54.1 NC_003387.1 + 36135 0.69 0.611185
Target:  5'- gGUCGUCGAgugagCC-C-CGACGaggCGGUCGg -3'
miRNA:   3'- -CAGCAGCUa----GGuGuGCUGCa--GCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 48051 0.69 0.622155
Target:  5'- cUCGUCuugCUugGCGGCGUCGGcCGc -3'
miRNA:   3'- cAGCAGcuaGGugUGCUGCAGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 15627 0.69 0.622155
Target:  5'- -aCGUCGAgggCgCGCACGGCGa-GGUCGa -3'
miRNA:   3'- caGCAGCUa--G-GUGUGCUGCagCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 10415 0.69 0.622155
Target:  5'- cUCGUCGcgCCACGCcuuGAuCGUCGGggCGa -3'
miRNA:   3'- cAGCAGCuaGGUGUG---CU-GCAGCCa-GU- -5'
12862 5' -54.1 NC_003387.1 + 50601 0.69 0.633134
Target:  5'- -aCGUCGG-CCGCugGgGCGUCGG-CGa -3'
miRNA:   3'- caGCAGCUaGGUGugC-UGCAGCCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.