miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12862 5' -54.1 NC_003387.1 + 24228 0.68 0.687812
Target:  5'- cGUCGUCGugguugCCGCcgACGACGUCGa--- -3'
miRNA:   3'- -CAGCAGCua----GGUG--UGCUGCAGCcagu -5'
12862 5' -54.1 NC_003387.1 + 26282 0.73 0.378415
Target:  5'- aUCG-CGAUCCACgGCGugagcugcuCGUCGGUCAc -3'
miRNA:   3'- cAGCaGCUAGGUG-UGCu--------GCAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 27454 0.73 0.387305
Target:  5'- --gGUCGAgcgCaCGCGCGACGUCGGcCGg -3'
miRNA:   3'- cagCAGCUa--G-GUGUGCUGCAGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 30252 0.67 0.751537
Target:  5'- gGUCGUCGGggUCgGCGcCGGgGUCGGgCAg -3'
miRNA:   3'- -CAGCAGCU--AGgUGU-GCUgCAGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 30907 0.66 0.771933
Target:  5'- -gCGUUGGUCgC-CACGGCGUCGcUCGc -3'
miRNA:   3'- caGCAGCUAG-GuGUGCUGCAGCcAGU- -5'
12862 5' -54.1 NC_003387.1 + 34339 0.66 0.771933
Target:  5'- cGUCGcagcCGAUCgACGuCGACGU-GGUCGa -3'
miRNA:   3'- -CAGCa---GCUAGgUGU-GCUGCAgCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 34540 0.69 0.633134
Target:  5'- -cCGUCGAcCCGCucgACGACGUCGuGUa- -3'
miRNA:   3'- caGCAGCUaGGUG---UGCUGCAGC-CAgu -5'
12862 5' -54.1 NC_003387.1 + 36135 0.69 0.611185
Target:  5'- gGUCGUCGAgugagCC-C-CGACGaggCGGUCGg -3'
miRNA:   3'- -CAGCAGCUa----GGuGuGCUGCa--GCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 36651 0.73 0.396332
Target:  5'- uGUCGUCGAUCUGCcCGACGaccucgCGGaUCAu -3'
miRNA:   3'- -CAGCAGCUAGGUGuGCUGCa-----GCC-AGU- -5'
12862 5' -54.1 NC_003387.1 + 37262 0.67 0.751537
Target:  5'- -gUGUCGG-CC-CGCGugG-CGGUCAa -3'
miRNA:   3'- caGCAGCUaGGuGUGCugCaGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 37309 0.67 0.730658
Target:  5'- gGUCGUCGA-CCGCGcCGACGUgccgUGGaCGa -3'
miRNA:   3'- -CAGCAGCUaGGUGU-GCUGCA----GCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 37551 0.71 0.52479
Target:  5'- cUCGUCGAUCaccuCGCGGCG-CGcGUCGa -3'
miRNA:   3'- cAGCAGCUAGgu--GUGCUGCaGC-CAGU- -5'
12862 5' -54.1 NC_003387.1 + 37904 0.66 0.801422
Target:  5'- gGUCGU-GAUCgUGCGCGcCGUgGGUCGg -3'
miRNA:   3'- -CAGCAgCUAG-GUGUGCuGCAgCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 39493 0.74 0.36105
Target:  5'- -cUGUCGGcCUGCuCGGCGUCGGUCAg -3'
miRNA:   3'- caGCAGCUaGGUGuGCUGCAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 42792 0.71 0.514278
Target:  5'- aGUUGUUGAUCCGUAgGGCGUCGaUCAc -3'
miRNA:   3'- -CAGCAGCUAGGUGUgCUGCAGCcAGU- -5'
12862 5' -54.1 NC_003387.1 + 43568 0.69 0.611185
Target:  5'- cGUCGUCGcuGUaCUGCACGACGU-GGUUg -3'
miRNA:   3'- -CAGCAGC--UA-GGUGUGCUGCAgCCAGu -5'
12862 5' -54.1 NC_003387.1 + 44014 0.81 0.134191
Target:  5'- uGUCGUCGAgCgGCucguCGACGUCGGUCGg -3'
miRNA:   3'- -CAGCAGCUaGgUGu---GCUGCAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 46947 0.66 0.781921
Target:  5'- -gUGUCGAUCCGCGgCGAgCG-CGGcCGg -3'
miRNA:   3'- caGCAGCUAGGUGU-GCU-GCaGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 48051 0.69 0.622155
Target:  5'- cUCGUCuugCUugGCGGCGUCGGcCGc -3'
miRNA:   3'- cAGCAGcuaGGugUGCUGCAGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 50601 0.69 0.633134
Target:  5'- -aCGUCGG-CCGCugGgGCGUCGG-CGa -3'
miRNA:   3'- caGCAGCUaGGUGugC-UGCAGCCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.