miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12862 5' -54.1 NC_003387.1 + 20500 0.67 0.720065
Target:  5'- cUCGUCGcgCUcgcgcaGCGCGGCGUCGcgcucGUCGg -3'
miRNA:   3'- cAGCAGCuaGG------UGUGCUGCAGC-----CAGU- -5'
12862 5' -54.1 NC_003387.1 + 18389 0.69 0.633134
Target:  5'- -aCGUCGAUCgGCuGCGACGggUCGGcCGc -3'
miRNA:   3'- caGCAGCUAGgUG-UGCUGC--AGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 17055 0.67 0.720065
Target:  5'- cGUCGUCGAgg-ACGCGAUcgaGUgGGUCGa -3'
miRNA:   3'- -CAGCAGCUaggUGUGCUG---CAgCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 15627 0.69 0.622155
Target:  5'- -aCGUCGAgggCgCGCACGGCGa-GGUCGa -3'
miRNA:   3'- caGCAGCUa--G-GUGUGCUGCagCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 14700 0.66 0.791755
Target:  5'- cGUCGccgCGAUCCguugcgguGCACGGCuugcugCGGUCGc -3'
miRNA:   3'- -CAGCa--GCUAGG--------UGUGCUGca----GCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 14606 0.69 0.611185
Target:  5'- -gUGUCGGUCCACGUGuCGUaaaGGUCGc -3'
miRNA:   3'- caGCAGCUAGGUGUGCuGCAg--CCAGU- -5'
12862 5' -54.1 NC_003387.1 + 12986 0.69 0.611185
Target:  5'- gGUCGUCGAUaaucUCGCGCuGCGUCG-UCAg -3'
miRNA:   3'- -CAGCAGCUA----GGUGUGcUGCAGCcAGU- -5'
12862 5' -54.1 NC_003387.1 + 10415 0.69 0.622155
Target:  5'- cUCGUCGcgCCACGCcuuGAuCGUCGGggCGa -3'
miRNA:   3'- cAGCAGCuaGGUGUG---CU-GCAGCCa-GU- -5'
12862 5' -54.1 NC_003387.1 + 9038 0.66 0.810914
Target:  5'- cGUCGgCGAUCCACGCcAgGaUCGcGUCGc -3'
miRNA:   3'- -CAGCaGCUAGGUGUGcUgC-AGC-CAGU- -5'
12862 5' -54.1 NC_003387.1 + 8929 0.68 0.655079
Target:  5'- cUCGUCGAggaagCGgGCGACGcCGGUCc -3'
miRNA:   3'- cAGCAGCUag---GUgUGCUGCaGCCAGu -5'
12862 5' -54.1 NC_003387.1 + 8347 0.71 0.52479
Target:  5'- cUCGUCGA-CCAC-CGGguCGUCGGUUg -3'
miRNA:   3'- cAGCAGCUaGGUGuGCU--GCAGCCAGu -5'
12862 5' -54.1 NC_003387.1 + 7900 1.09 0.001636
Target:  5'- uGUCGUCGAUCCACACGACGUCGGUCAg -3'
miRNA:   3'- -CAGCAGCUAGGUGUGCUGCAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 6157 0.67 0.730658
Target:  5'- gGUCGgcguagcCGAUCagcguCACGACGUCGGcCu -3'
miRNA:   3'- -CAGCa------GCUAGgu---GUGCUGCAGCCaGu -5'
12862 5' -54.1 NC_003387.1 + 4779 0.67 0.741152
Target:  5'- uUCG-CGGcCCACACGGCGUCGu--- -3'
miRNA:   3'- cAGCaGCUaGGUGUGCUGCAGCcagu -5'
12862 5' -54.1 NC_003387.1 + 4425 0.72 0.473158
Target:  5'- uUCGUCGAggCGgGCGgcgaacucuGCGUCGGUCAu -3'
miRNA:   3'- cAGCAGCUagGUgUGC---------UGCAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 2061 0.71 0.514278
Target:  5'- gGUCGagaaUGGUCUGCGCGACG-CGGUCc -3'
miRNA:   3'- -CAGCa---GCUAGGUGUGCUGCaGCCAGu -5'
12862 5' -54.1 NC_003387.1 + 1602 0.66 0.810914
Target:  5'- -aUGUCGcacggCCugGCGAUuUCGGUCGg -3'
miRNA:   3'- caGCAGCua---GGugUGCUGcAGCCAGU- -5'
12862 5' -54.1 NC_003387.1 + 1472 0.67 0.751537
Target:  5'- gGUCGUCGAgggCCaggGCGuCGACGUCGaG-CAc -3'
miRNA:   3'- -CAGCAGCUa--GG---UGU-GCUGCAGC-CaGU- -5'
12862 5' -54.1 NC_003387.1 + 756 0.67 0.729603
Target:  5'- --gGUCGG-CCACcgcggcaGCGACGUCGGgCAg -3'
miRNA:   3'- cagCAGCUaGGUG-------UGCUGCAGCCaGU- -5'
12862 5' -54.1 NC_003387.1 + 742 0.7 0.589308
Target:  5'- -cCGUCGGUgCGCGCGACGUgUGGcgCGa -3'
miRNA:   3'- caGCAGCUAgGUGUGCUGCA-GCCa-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.