miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12863 3' -53.4 NC_003387.1 + 37518 0.66 0.836017
Target:  5'- cCACAagcGAAUGAgCGGCCG-GGCGCg -3'
miRNA:   3'- uGUGUau-CUUGCU-GCUGGCgCCGUGg -5'
12863 3' -53.4 NC_003387.1 + 30119 0.66 0.836017
Target:  5'- cCGCAagggccuGAGCuuCGACCGUGGCcgcACCg -3'
miRNA:   3'- uGUGUau-----CUUGcuGCUGGCGCCG---UGG- -5'
12863 3' -53.4 NC_003387.1 + 2446 0.66 0.836017
Target:  5'- cCGCAUGGAcgcGCGccaGGCCGagGuGCACCg -3'
miRNA:   3'- uGUGUAUCU---UGCug-CUGGCg-C-CGUGG- -5'
12863 3' -53.4 NC_003387.1 + 45930 0.66 0.836017
Target:  5'- gGCACGUGcccGAGCGuguuCG-CCGaCGGC-CCg -3'
miRNA:   3'- -UGUGUAU---CUUGCu---GCuGGC-GCCGuGG- -5'
12863 3' -53.4 NC_003387.1 + 16909 0.66 0.836017
Target:  5'- gUACG-AGAGCaucGCG-CCGaCGGCGCCg -3'
miRNA:   3'- uGUGUaUCUUGc--UGCuGGC-GCCGUGG- -5'
12863 3' -53.4 NC_003387.1 + 24865 0.66 0.836017
Target:  5'- cGCGCcgG---UGuCGAUCGUGGCGCCg -3'
miRNA:   3'- -UGUGuaUcuuGCuGCUGGCGCCGUGG- -5'
12863 3' -53.4 NC_003387.1 + 25162 0.66 0.826972
Target:  5'- gACGCAgguucggcucGGcGCGGUGGCCcCGGCGCCg -3'
miRNA:   3'- -UGUGUa---------UCuUGCUGCUGGcGCCGUGG- -5'
12863 3' -53.4 NC_003387.1 + 36001 0.66 0.826972
Target:  5'- gGCACGaucGACGGCGAggUCGUGGUgcGCCg -3'
miRNA:   3'- -UGUGUaucUUGCUGCU--GGCGCCG--UGG- -5'
12863 3' -53.4 NC_003387.1 + 34040 0.66 0.826972
Target:  5'- cGCACcUGGu-CGGCGugUGgGGCgGCCu -3'
miRNA:   3'- -UGUGuAUCuuGCUGCugGCgCCG-UGG- -5'
12863 3' -53.4 NC_003387.1 + 37085 0.66 0.826972
Target:  5'- -gACAUGGu-CGACcucGCCGUGcGCGCCc -3'
miRNA:   3'- ugUGUAUCuuGCUGc--UGGCGC-CGUGG- -5'
12863 3' -53.4 NC_003387.1 + 16590 0.66 0.826972
Target:  5'- aACGCcgGGAcgcuuuacuACGAuuuCGACCuCGGCACg -3'
miRNA:   3'- -UGUGuaUCU---------UGCU---GCUGGcGCCGUGg -5'
12863 3' -53.4 NC_003387.1 + 6070 0.66 0.826972
Target:  5'- aGCGCAcc--AUGACGACCGcCGGgGCg -3'
miRNA:   3'- -UGUGUaucuUGCUGCUGGC-GCCgUGg -5'
12863 3' -53.4 NC_003387.1 + 16928 0.66 0.826972
Target:  5'- -aACAUGGGGCGccgcuACGACguuCGGUACCu -3'
miRNA:   3'- ugUGUAUCUUGC-----UGCUGgc-GCCGUGG- -5'
12863 3' -53.4 NC_003387.1 + 21675 0.66 0.821445
Target:  5'- aGCACGUguucgccgacgcccuGGccgccuCGGCGAgCGCGGC-CCg -3'
miRNA:   3'- -UGUGUA---------------UCuu----GCUGCUgGCGCCGuGG- -5'
12863 3' -53.4 NC_003387.1 + 28085 0.66 0.817719
Target:  5'- cGCGCAgcAGGGCGAgGugCGUcgGGuCGCCc -3'
miRNA:   3'- -UGUGUa-UCUUGCUgCugGCG--CC-GUGG- -5'
12863 3' -53.4 NC_003387.1 + 41315 0.66 0.817719
Target:  5'- aGCACcucGGGGCcgaucGCGGCCagcGUGGCGCCg -3'
miRNA:   3'- -UGUGua-UCUUGc----UGCUGG---CGCCGUGG- -5'
12863 3' -53.4 NC_003387.1 + 14456 0.66 0.817719
Target:  5'- cACGCAUGGGuucCGuuGGCUGCGuGUGCUg -3'
miRNA:   3'- -UGUGUAUCUu--GCugCUGGCGC-CGUGG- -5'
12863 3' -53.4 NC_003387.1 + 3843 0.66 0.817719
Target:  5'- gGCGCgGUAGGcggcgcCGACGAUC-CGGCugCg -3'
miRNA:   3'- -UGUG-UAUCUu-----GCUGCUGGcGCCGugG- -5'
12863 3' -53.4 NC_003387.1 + 52504 0.66 0.817719
Target:  5'- cGCGCAUGucaacccuCGACGAaCGCGGCAa- -3'
miRNA:   3'- -UGUGUAUcuu-----GCUGCUgGCGCCGUgg -5'
12863 3' -53.4 NC_003387.1 + 13137 0.66 0.817719
Target:  5'- gGCGCAgcuugAGGACGcCGAgcaCCGCGuGCagaagGCCg -3'
miRNA:   3'- -UGUGUa----UCUUGCuGCU---GGCGC-CG-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.