miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12863 5' -58.1 NC_003387.1 + 23809 0.66 0.527679
Target:  5'- -cGCCGCCGC-GCAGCa-GAuACGUGa -3'
miRNA:   3'- cuCGGUGGCGuCGUCGgcCU-UGUACa -5'
12863 5' -58.1 NC_003387.1 + 49054 0.66 0.527679
Target:  5'- cGGCCucggucagGCCGCu-CAGCCGGGGCAc-- -3'
miRNA:   3'- cUCGG--------UGGCGucGUCGGCCUUGUaca -5'
12863 5' -58.1 NC_003387.1 + 26899 0.66 0.527679
Target:  5'- aGGCCACCGCccaGGCcGCC-GAGCAg-- -3'
miRNA:   3'- cUCGGUGGCG---UCGuCGGcCUUGUaca -5'
12863 5' -58.1 NC_003387.1 + 24269 0.66 0.527679
Target:  5'- gGGGCCGCCGcCAGCucGUCGau-CGUGUa -3'
miRNA:   3'- -CUCGGUGGC-GUCGu-CGGCcuuGUACA- -5'
12863 5' -58.1 NC_003387.1 + 41350 0.66 0.527679
Target:  5'- -cGCCACCGCGcgaaauGCaaGGCCGacgccGAGCGUGa -3'
miRNA:   3'- cuCGGUGGCGU------CG--UCGGC-----CUUGUACa -5'
12863 5' -58.1 NC_003387.1 + 48523 0.66 0.517115
Target:  5'- uGGGCCGacaCGCGGUGGCCGaAGCAc-- -3'
miRNA:   3'- -CUCGGUg--GCGUCGUCGGCcUUGUaca -5'
12863 5' -58.1 NC_003387.1 + 51971 0.66 0.517115
Target:  5'- -cGCUGCCGCGGUGGCCGaccGCAUc- -3'
miRNA:   3'- cuCGGUGGCGUCGUCGGCcu-UGUAca -5'
12863 5' -58.1 NC_003387.1 + 20809 0.66 0.517115
Target:  5'- uGAGCCACCGCucGgAGCagGGGAUAcGUc -3'
miRNA:   3'- -CUCGGUGGCGu-CgUCGg-CCUUGUaCA- -5'
12863 5' -58.1 NC_003387.1 + 51043 0.66 0.517115
Target:  5'- -cGCCGCCGCGGU-GUCGGuACcgGc -3'
miRNA:   3'- cuCGGUGGCGUCGuCGGCCuUGuaCa -5'
12863 5' -58.1 NC_003387.1 + 33977 0.66 0.506637
Target:  5'- uGAGCUGCCGCAGCGGgucgCGGucGACGa-- -3'
miRNA:   3'- -CUCGGUGGCGUCGUCg---GCC--UUGUaca -5'
12863 5' -58.1 NC_003387.1 + 27457 0.66 0.496251
Target:  5'- cGAGCgCACgCGCGacGuCGGCCGGAuagccgguccACAUGUc -3'
miRNA:   3'- -CUCG-GUG-GCGU--C-GUCGGCCU----------UGUACA- -5'
12863 5' -58.1 NC_003387.1 + 8191 0.66 0.485962
Target:  5'- cGAGCC-CUGCGGC-GCCGGGcgGCccGg -3'
miRNA:   3'- -CUCGGuGGCGUCGuCGGCCU--UGuaCa -5'
12863 5' -58.1 NC_003387.1 + 41151 0.66 0.483916
Target:  5'- cGGCCGCUGCGagugucagggcgaguGCGGCCGGucgcaccguuucggcGGCGUGc -3'
miRNA:   3'- cUCGGUGGCGU---------------CGUCGGCC---------------UUGUACa -5'
12863 5' -58.1 NC_003387.1 + 3933 0.66 0.475775
Target:  5'- -cGCCGCCGCGGCgaucAGCgGcGAGC-UGg -3'
miRNA:   3'- cuCGGUGGCGUCG----UCGgC-CUUGuACa -5'
12863 5' -58.1 NC_003387.1 + 25139 0.66 0.475775
Target:  5'- cGGCaCACCGC-GCAGCCgaucGGGGCucGUGUc -3'
miRNA:   3'- cUCG-GUGGCGuCGUCGG----CCUUG--UACA- -5'
12863 5' -58.1 NC_003387.1 + 34853 0.67 0.465695
Target:  5'- cGGGCCuuGCgGUgagAGCAGCCGGAaauGCAgGUg -3'
miRNA:   3'- -CUCGG--UGgCG---UCGUCGGCCU---UGUaCA- -5'
12863 5' -58.1 NC_003387.1 + 20113 0.67 0.455728
Target:  5'- -cGCCcCCGCGGCgAGCCcGAGCAg-- -3'
miRNA:   3'- cuCGGuGGCGUCG-UCGGcCUUGUaca -5'
12863 5' -58.1 NC_003387.1 + 22172 0.67 0.455728
Target:  5'- cGGCCGCgGCGGCGGUccauguCGGGGCGc-- -3'
miRNA:   3'- cUCGGUGgCGUCGUCG------GCCUUGUaca -5'
12863 5' -58.1 NC_003387.1 + 40601 0.67 0.454738
Target:  5'- uAGCaCACCGCauuucgaGGCgGGCCGGuGGCGUGg -3'
miRNA:   3'- cUCG-GUGGCG-------UCG-UCGGCC-UUGUACa -5'
12863 5' -58.1 NC_003387.1 + 18406 0.67 0.442945
Target:  5'- cGGGUCgGCCGCgGGCAGCgCGGGcugcucgggcagccACGUGUa -3'
miRNA:   3'- -CUCGG-UGGCG-UCGUCG-GCCU--------------UGUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.