miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12864 3' -65.4 NC_003387.1 + 17160 0.78 0.029491
Target:  5'- gGCCCGCgcugagcuggUGCGCCGCCUGggCGGCgaCg -3'
miRNA:   3'- -CGGGCG----------ACGCGGCGGACgaGCCGgaG- -5'
12864 3' -65.4 NC_003387.1 + 26135 0.67 0.195611
Target:  5'- cGUCCGU--CGCCGCUcGCgCGGCCUg -3'
miRNA:   3'- -CGGGCGacGCGGCGGaCGaGCCGGAg -5'
12864 3' -65.4 NC_003387.1 + 44535 0.67 0.20524
Target:  5'- cGCCCG--GCGCCGCaggGCUCgaaagacuucaagGGCUUCu -3'
miRNA:   3'- -CGGGCgaCGCGGCGga-CGAG-------------CCGGAG- -5'
12864 3' -65.4 NC_003387.1 + 37456 0.66 0.244912
Target:  5'- uGCCaugcuggcggCGCUGCGCCGCCaaaaggUGC-CGGUg-- -3'
miRNA:   3'- -CGG----------GCGACGCGGCGG------ACGaGCCGgag -5'
12864 3' -65.4 NC_003387.1 + 24252 0.71 0.104391
Target:  5'- cGCCUaugugaaguGCUGCGCCGCgauCUGC-CGccGCCUCg -3'
miRNA:   3'- -CGGG---------CGACGCGGCG---GACGaGC--CGGAG- -5'
12864 3' -65.4 NC_003387.1 + 47732 0.71 0.104391
Target:  5'- gGCCCGCagaaucGCGaCCGaCCUGCUgcgcgagcaCGGCCUg -3'
miRNA:   3'- -CGGGCGa-----CGC-GGC-GGACGA---------GCCGGAg -5'
12864 3' -65.4 NC_003387.1 + 25796 0.7 0.110132
Target:  5'- gGCCUGCUcgGCgGCCucgguggcgGCCUGCUCGGCg-- -3'
miRNA:   3'- -CGGGCGA--CG-CGG---------CGGACGAGCCGgag -5'
12864 3' -65.4 NC_003387.1 + 25576 0.7 0.1258
Target:  5'- cCCCgGCgGCGCCGaCCccgGCgggcaCGGCCUCg -3'
miRNA:   3'- cGGG-CGaCGCGGC-GGa--CGa----GCCGGAG- -5'
12864 3' -65.4 NC_003387.1 + 3533 0.68 0.17214
Target:  5'- cCCCGC--CGCCGCCccaggcggcUGCUCaGGCgCUCa -3'
miRNA:   3'- cGGGCGacGCGGCGG---------ACGAG-CCG-GAG- -5'
12864 3' -65.4 NC_003387.1 + 21715 0.67 0.195115
Target:  5'- gGCCCGCgccgaccuggucgUGgaaauCGUCGCCgaggcGCUCGGCgUCa -3'
miRNA:   3'- -CGGGCG-------------AC-----GCGGCGGa----CGAGCCGgAG- -5'
12864 3' -65.4 NC_003387.1 + 45766 0.68 0.17214
Target:  5'- gGCgCGCUGUGgCGCCUGC-CcGCCg- -3'
miRNA:   3'- -CGgGCGACGCgGCGGACGaGcCGGag -5'
12864 3' -65.4 NC_003387.1 + 266 0.68 0.167758
Target:  5'- uGCCCugGCUGCGCCGC--GC-CGGUCg- -3'
miRNA:   3'- -CGGG--CGACGCGGCGgaCGaGCCGGag -5'
12864 3' -65.4 NC_003387.1 + 138 0.74 0.054312
Target:  5'- cGCCCucGCgauccGCGCCGCCgaGCUgGGCCUg -3'
miRNA:   3'- -CGGG--CGa----CGCGGCGGa-CGAgCCGGAg -5'
12864 3' -65.4 NC_003387.1 + 4232 0.68 0.176624
Target:  5'- aCCUGCagGC-CCGCC-GCgaCGGCCUCa -3'
miRNA:   3'- cGGGCGa-CGcGGCGGaCGa-GCCGGAG- -5'
12864 3' -65.4 NC_003387.1 + 19572 0.74 0.060631
Target:  5'- aGUCgGCUG-GCgaGCCUGCUCGGCgUCg -3'
miRNA:   3'- -CGGgCGACgCGg-CGGACGAGCCGgAG- -5'
12864 3' -65.4 NC_003387.1 + 17581 0.69 0.151216
Target:  5'- cCCCGCUG-GUCGaCCUGCagUGGCCg- -3'
miRNA:   3'- cGGGCGACgCGGC-GGACGa-GCCGGag -5'
12864 3' -65.4 NC_003387.1 + 34505 0.67 0.190703
Target:  5'- cGCCCGCcgcUGCGgCGCCgcgaucCUCGGgCUg -3'
miRNA:   3'- -CGGGCG---ACGCgGCGGac----GAGCCgGAg -5'
12864 3' -65.4 NC_003387.1 + 32573 0.67 0.200629
Target:  5'- cGCCCucggguucgcGCUGCucauccugacGUCGauCCUGCUCGGgCUCg -3'
miRNA:   3'- -CGGG----------CGACG----------CGGC--GGACGAGCCgGAG- -5'
12864 3' -65.4 NC_003387.1 + 51420 0.72 0.081881
Target:  5'- cGCCUGCgGCGCCGCCUcgaacugcGC-CGGUCg- -3'
miRNA:   3'- -CGGGCGaCGCGGCGGA--------CGaGCCGGag -5'
12864 3' -65.4 NC_003387.1 + 28136 0.71 0.108379
Target:  5'- gGCCCGCaaGCGCCccacgaucgagcccgGCCaGCUCGGCUc- -3'
miRNA:   3'- -CGGGCGa-CGCGG---------------CGGaCGAGCCGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.