miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12864 5' -53.3 NC_003387.1 + 2652 0.66 0.805348
Target:  5'- -----aCCGGCGCGGCGU-GCUGUAc -3'
miRNA:   3'- guuaccGGCUGUGCUGCAgCGACAUc -5'
12864 5' -53.3 NC_003387.1 + 4783 0.68 0.679352
Target:  5'- ---cGGCCcACACGGCGUCGUg---- -3'
miRNA:   3'- guuaCCGGcUGUGCUGCAGCGacauc -5'
12864 5' -53.3 NC_003387.1 + 4925 0.69 0.646022
Target:  5'- --cUGcCCGGCGCGGCGUCGCg---- -3'
miRNA:   3'- guuACcGGCUGUGCUGCAGCGacauc -5'
12864 5' -53.3 NC_003387.1 + 5178 0.67 0.775584
Target:  5'- ---cGGCCGacgaGCACGACcUCGCcGUAa -3'
miRNA:   3'- guuaCCGGC----UGUGCUGcAGCGaCAUc -5'
12864 5' -53.3 NC_003387.1 + 6461 1.09 0.001531
Target:  5'- uCAAUGGCCGACACGACGUCGCUGUAGg -3'
miRNA:   3'- -GUUACCGGCUGUGCUGCAGCGACAUC- -5'
12864 5' -53.3 NC_003387.1 + 8524 0.69 0.657159
Target:  5'- ---gGGCCGAC-CGGC-UCGCggGUAGu -3'
miRNA:   3'- guuaCCGGCUGuGCUGcAGCGa-CAUC- -5'
12864 5' -53.3 NC_003387.1 + 9700 0.69 0.646022
Target:  5'- ---gGGCCGugACGGCGg-GCUGa-- -3'
miRNA:   3'- guuaCCGGCugUGCUGCagCGACauc -5'
12864 5' -53.3 NC_003387.1 + 10030 0.66 0.814911
Target:  5'- ---cGGUCGGCGUGACGUUaGCUGUc- -3'
miRNA:   3'- guuaCCGGCUGUGCUGCAG-CGACAuc -5'
12864 5' -53.3 NC_003387.1 + 11565 0.66 0.824278
Target:  5'- gCGGUGGCgauCGGCaccaaggcguACGGCGUCGCgauggccgUGUGGu -3'
miRNA:   3'- -GUUACCG---GCUG----------UGCUGCAGCG--------ACAUC- -5'
12864 5' -53.3 NC_003387.1 + 12014 0.74 0.358759
Target:  5'- --cUGGUCGACACGGCGcaugCGgUGUGGc -3'
miRNA:   3'- guuACCGGCUGUGCUGCa---GCgACAUC- -5'
12864 5' -53.3 NC_003387.1 + 12576 0.66 0.824278
Target:  5'- ---gGGCCGcCgACGGUGUCGCcGUGGg -3'
miRNA:   3'- guuaCCGGCuG-UGCUGCAGCGaCAUC- -5'
12864 5' -53.3 NC_003387.1 + 13019 0.66 0.814911
Target:  5'- ---aGGUCGACAgcgccCGcACGUCGCUGc-- -3'
miRNA:   3'- guuaCCGGCUGU-----GC-UGCAGCGACauc -5'
12864 5' -53.3 NC_003387.1 + 13402 0.7 0.567159
Target:  5'- gAGUGGCCGACGguuaaguCGGCGcUCGCcgGUGu -3'
miRNA:   3'- gUUACCGGCUGU-------GCUGC-AGCGa-CAUc -5'
12864 5' -53.3 NC_003387.1 + 15072 0.75 0.317399
Target:  5'- -cGUGGUCGugACGGCGaCGCUGuUGGa -3'
miRNA:   3'- guUACCGGCugUGCUGCaGCGAC-AUC- -5'
12864 5' -53.3 NC_003387.1 + 18515 0.69 0.623718
Target:  5'- ---gGGCacCGAcCGCGACGUggCGCUGUGGc -3'
miRNA:   3'- guuaCCG--GCU-GUGCUGCA--GCGACAUC- -5'
12864 5' -53.3 NC_003387.1 + 21600 0.77 0.245708
Target:  5'- ---aGGCCGACGCGGCGcUGCUGg-- -3'
miRNA:   3'- guuaCCGGCUGUGCUGCaGCGACauc -5'
12864 5' -53.3 NC_003387.1 + 22013 0.66 0.814911
Target:  5'- ---aGGCCGugacgcuagaGCGCGGCGUCGacauuccGUGGg -3'
miRNA:   3'- guuaCCGGC----------UGUGCUGCAGCga-----CAUC- -5'
12864 5' -53.3 NC_003387.1 + 22665 0.68 0.690385
Target:  5'- ---cGGCCGuCAgGGCG-CGCUcGUGGg -3'
miRNA:   3'- guuaCCGGCuGUgCUGCaGCGA-CAUC- -5'
12864 5' -53.3 NC_003387.1 + 23886 0.67 0.765343
Target:  5'- -uGUGGCUGGC-CGACGU-GCUGc-- -3'
miRNA:   3'- guUACCGGCUGuGCUGCAgCGACauc -5'
12864 5' -53.3 NC_003387.1 + 26806 0.66 0.805348
Target:  5'- ---aGGCCGcGCugGugGUCGgUGa-- -3'
miRNA:   3'- guuaCCGGC-UGugCugCAGCgACauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.