Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12865 | 3' | -57.7 | NC_003387.1 | + | 5927 | 0.91 | 0.012152 |
Target: 5'- aGCGcGGGCCgUCGAACACCUUCUCGAUc -3' miRNA: 3'- gCGC-CCCGG-AGCUUGUGGAAGAGCUA- -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 48232 | 0.73 | 0.210098 |
Target: 5'- aGCGGGGCCUccgCGGGCucgGCCUUCgcggCGGg -3' miRNA: 3'- gCGCCCCGGA---GCUUG---UGGAAGa---GCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 38090 | 0.72 | 0.251839 |
Target: 5'- gCGCGGcGGCCUgaCGGGCACCUg--CGAc -3' miRNA: 3'- -GCGCC-CCGGA--GCUUGUGGAagaGCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 694 | 0.72 | 0.271724 |
Target: 5'- aCGCaGGGCCUUGAuCGCCUcgUCgUCGAg -3' miRNA: 3'- -GCGcCCCGGAGCUuGUGGA--AG-AGCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 19004 | 0.71 | 0.307637 |
Target: 5'- gGCGuGGGCCUCGAcgaACCUgUUCGGa -3' miRNA: 3'- gCGC-CCCGGAGCUug-UGGAaGAGCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 2980 | 0.7 | 0.363821 |
Target: 5'- uCGCucGGGGCCUCGcgaGGCGCUg-CUCGAUc -3' miRNA: 3'- -GCG--CCCCGGAGC---UUGUGGaaGAGCUA- -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 17892 | 0.69 | 0.372405 |
Target: 5'- cCGCGcGGGCCgucgaCGAACAU--UCUCGAc -3' miRNA: 3'- -GCGC-CCCGGa----GCUUGUGgaAGAGCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 48289 | 0.69 | 0.389983 |
Target: 5'- gGCGcGGGCUcggCGAACGCCUUgcccagCUCGGc -3' miRNA: 3'- gCGC-CCCGGa--GCUUGUGGAA------GAGCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 6780 | 0.68 | 0.417345 |
Target: 5'- uGCGcGGGCCgucggCGAACACg--CUCGGg -3' miRNA: 3'- gCGC-CCCGGa----GCUUGUGgaaGAGCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 34782 | 0.68 | 0.417345 |
Target: 5'- cCGCGGGGCCUCgcuuGAGCACUacgUCGc- -3' miRNA: 3'- -GCGCCCCGGAG----CUUGUGGaagAGCua -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 6085 | 0.68 | 0.417345 |
Target: 5'- cCGcCGGGGCgucgucggcaggCUCGAACACCUg--CGAc -3' miRNA: 3'- -GC-GCCCCG------------GAGCUUGUGGAagaGCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 43799 | 0.68 | 0.455586 |
Target: 5'- uCGCGGuGGCCUCGGACgugagcacguuGCCcUCgcCGAa -3' miRNA: 3'- -GCGCC-CCGGAGCUUG-----------UGGaAGa-GCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 32736 | 0.67 | 0.475402 |
Target: 5'- gCGCGGuGGCCUCGGcgauucggGCugUcaaCUCGAUg -3' miRNA: 3'- -GCGCC-CCGGAGCU--------UGugGaa-GAGCUA- -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 8996 | 0.67 | 0.475402 |
Target: 5'- uCGCGGGcucccgcaugccGCCgUCGAGCACCUgg-CGGg -3' miRNA: 3'- -GCGCCC------------CGG-AGCUUGUGGAagaGCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 52537 | 0.67 | 0.48547 |
Target: 5'- uCGC-GGGCCgagUCGAGCACCgUCUUGc- -3' miRNA: 3'- -GCGcCCCGG---AGCUUGUGGaAGAGCua -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 5208 | 0.67 | 0.503842 |
Target: 5'- uGUGGcGCCUCGggUACCgcacgaugcugCUCGAc -3' miRNA: 3'- gCGCCcCGGAGCuuGUGGaa---------GAGCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 4573 | 0.67 | 0.526693 |
Target: 5'- cCGCGcGGGCCUCGGugGCGCgCUgCgcgCGGg -3' miRNA: 3'- -GCGC-CCCGGAGCU--UGUG-GAaGa--GCUa -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 23246 | 0.67 | 0.526693 |
Target: 5'- uCGCGGGccguGCCcugcUCGcuGGCGCCgUUCUCGAUc -3' miRNA: 3'- -GCGCCC----CGG----AGC--UUGUGG-AAGAGCUA- -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 3390 | 0.66 | 0.547797 |
Target: 5'- gGCGGGcauCCcgaUCGAGCACCUgcUgUCGAUg -3' miRNA: 3'- gCGCCCc--GG---AGCUUGUGGA--AgAGCUA- -5' |
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12865 | 3' | -57.7 | NC_003387.1 | + | 25814 | 0.66 | 0.552051 |
Target: 5'- gGUGGcGGCCUgcucggcggccugggCGGugGCCUgCUCGGUg -3' miRNA: 3'- gCGCC-CCGGA---------------GCUugUGGAaGAGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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