miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12866 3' -54.4 NC_003387.1 + 27318 0.65 0.786702
Target:  5'- cGUCGCC-GUGAucgccgcgauuUCgGAGCACCAGGc -3'
miRNA:   3'- cCGGCGGuUACUuc---------AG-CUCGUGGUCC- -5'
12866 3' -54.4 NC_003387.1 + 15607 0.66 0.778737
Target:  5'- cGGCCcgGCCGAc---GUCGAGCACgucgAGGg -3'
miRNA:   3'- -CCGG--CGGUUacuuCAGCUCGUGg---UCC- -5'
12866 3' -54.4 NC_003387.1 + 21258 0.66 0.778737
Target:  5'- cGCCGCgAcgaGGAGUCGGGCA--AGGu -3'
miRNA:   3'- cCGGCGgUua-CUUCAGCUCGUggUCC- -5'
12866 3' -54.4 NC_003387.1 + 30031 0.66 0.778737
Target:  5'- aGGCCGCCAGcgccGccGUCGA-CACCGc- -3'
miRNA:   3'- -CCGGCGGUUa---CuuCAGCUcGUGGUcc -5'
12866 3' -54.4 NC_003387.1 + 49191 0.66 0.778737
Target:  5'- aGCCGCC--UGggG-CG-GCGgCGGGg -3'
miRNA:   3'- cCGGCGGuuACuuCaGCuCGUgGUCC- -5'
12866 3' -54.4 NC_003387.1 + 985 0.66 0.778737
Target:  5'- cGCCGCCGAggcgccgaccGggGUCGGauGCGCUGcGGc -3'
miRNA:   3'- cCGGCGGUUa---------CuuCAGCU--CGUGGU-CC- -5'
12866 3' -54.4 NC_003387.1 + 41961 0.66 0.768644
Target:  5'- aGGCCGCCAGcGAGGagcuGCGCgCGGa -3'
miRNA:   3'- -CCGGCGGUUaCUUCagcuCGUG-GUCc -5'
12866 3' -54.4 NC_003387.1 + 10271 0.66 0.767627
Target:  5'- aGGUCGCCcc-GAAGuucgacaccUCGGGCgcucagcgcgcagGCCAGGa -3'
miRNA:   3'- -CCGGCGGuuaCUUC---------AGCUCG-------------UGGUCC- -5'
12866 3' -54.4 NC_003387.1 + 43080 0.66 0.767627
Target:  5'- gGGCUGgCAcaccaggGUGA---CGGGCGCCGGGu -3'
miRNA:   3'- -CCGGCgGU-------UACUucaGCUCGUGGUCC- -5'
12866 3' -54.4 NC_003387.1 + 49235 0.66 0.75841
Target:  5'- aGGCgGCCGAgcgGcuGcUCGA-CGCCGGGg -3'
miRNA:   3'- -CCGgCGGUUa--CuuC-AGCUcGUGGUCC- -5'
12866 3' -54.4 NC_003387.1 + 43702 0.66 0.75841
Target:  5'- uGGCgGaUCAucuUGuccucguacaccGAGUCGAGCACCAGc -3'
miRNA:   3'- -CCGgC-GGUu--AC------------UUCAGCUCGUGGUCc -5'
12866 3' -54.4 NC_003387.1 + 21669 0.66 0.75841
Target:  5'- cGUCGCCGGUGccaUCG-GCGCCGGu -3'
miRNA:   3'- cCGGCGGUUACuucAGCuCGUGGUCc -5'
12866 3' -54.4 NC_003387.1 + 24507 0.66 0.75841
Target:  5'- aGCCGUCGcgGcugcgcuuGcCGAGCugCAGGu -3'
miRNA:   3'- cCGGCGGUuaCuu------CaGCUCGugGUCC- -5'
12866 3' -54.4 NC_003387.1 + 26777 0.66 0.734396
Target:  5'- uGGCCGCCGAaggcaccgcagccaUGuggguGUgGGGCGCCGu- -3'
miRNA:   3'- -CCGGCGGUU--------------ACuu---CAgCUCGUGGUcc -5'
12866 3' -54.4 NC_003387.1 + 23904 0.67 0.731221
Target:  5'- uGCgCGCCGAggggcUGAAcgucGUCGAGCugcccggcuggcucgACCGGGg -3'
miRNA:   3'- cCG-GCGGUU-----ACUU----CAGCUCG---------------UGGUCC- -5'
12866 3' -54.4 NC_003387.1 + 5531 0.67 0.726972
Target:  5'- cGGCgGCCAccugagccccGAGGgCGAcCACCAGGg -3'
miRNA:   3'- -CCGgCGGUua--------CUUCaGCUcGUGGUCC- -5'
12866 3' -54.4 NC_003387.1 + 12286 0.67 0.716288
Target:  5'- cGGCgGCCGGaucagcGGGcCGGGCACCGGc -3'
miRNA:   3'- -CCGgCGGUUac----UUCaGCUCGUGGUCc -5'
12866 3' -54.4 NC_003387.1 + 17744 0.67 0.716288
Target:  5'- cGGCuUGCCGA------CGGGCACCAGGc -3'
miRNA:   3'- -CCG-GCGGUUacuucaGCUCGUGGUCC- -5'
12866 3' -54.4 NC_003387.1 + 44384 0.67 0.716288
Target:  5'- cGGCaCGUCGggGucGUCGAGgucgGCCGGGc -3'
miRNA:   3'- -CCG-GCGGUuaCuuCAGCUCg---UGGUCC- -5'
12866 3' -54.4 NC_003387.1 + 38435 0.67 0.716288
Target:  5'- cGCCGCUuuuuauAGUCGAcGCGCuCGGGc -3'
miRNA:   3'- cCGGCGGuuacu-UCAGCU-CGUG-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.