miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12866 5' -56.3 NC_003387.1 + 22979 0.66 0.686851
Target:  5'- gUCGgCGUCcagcUCGCCCGC--GUAGCu -3'
miRNA:   3'- gAGCaGCAGc---AGCGGGCGuaCAUCGc -5'
12866 5' -56.3 NC_003387.1 + 11497 0.66 0.685779
Target:  5'- cCUCGUgGgcggugccuacgaUCGUCgGCCUGCGUGUcGCc -3'
miRNA:   3'- -GAGCAgC-------------AGCAG-CGGGCGUACAuCGc -5'
12866 5' -56.3 NC_003387.1 + 711 0.66 0.676104
Target:  5'- cCUCGUCGUCGagGgCCGaCAgGUcgGGCa -3'
miRNA:   3'- -GAGCAGCAGCagCgGGC-GUaCA--UCGc -5'
12866 5' -56.3 NC_003387.1 + 44396 0.66 0.6545
Target:  5'- gUCGUCGagGUCGgCCGgGccGUAGUGa -3'
miRNA:   3'- gAGCAGCagCAGCgGGCgUa-CAUCGC- -5'
12866 5' -56.3 NC_003387.1 + 11432 0.66 0.6545
Target:  5'- gCUCGUCGagguuucgcUCGUCGCCgucgagggggCGCAcgGUcAGCGu -3'
miRNA:   3'- -GAGCAGC---------AGCAGCGG----------GCGUa-CA-UCGC- -5'
12866 5' -56.3 NC_003387.1 + 2529 0.67 0.632815
Target:  5'- gUCGUCGUUgccgucccgGUCGCgcaggaugaacUCGCcgGUGGCGu -3'
miRNA:   3'- gAGCAGCAG---------CAGCG-----------GGCGuaCAUCGC- -5'
12866 5' -56.3 NC_003387.1 + 45750 0.67 0.632815
Target:  5'- --aGUUGUCGUCGCCCuCGacgagGGCGg -3'
miRNA:   3'- gagCAGCAGCAGCGGGcGUaca--UCGC- -5'
12866 5' -56.3 NC_003387.1 + 11430 0.67 0.621966
Target:  5'- -cUGUCGUCGgugcucgUGCCCGCGcUGcAGCu -3'
miRNA:   3'- gaGCAGCAGCa------GCGGGCGU-ACaUCGc -5'
12866 5' -56.3 NC_003387.1 + 48176 0.67 0.621966
Target:  5'- cCUUGUCGUaGUCGCCCGUuuccauUGcuGCGu -3'
miRNA:   3'- -GAGCAGCAgCAGCGGGCGu-----ACauCGC- -5'
12866 5' -56.3 NC_003387.1 + 49568 0.67 0.611127
Target:  5'- cCUCGcCGagGUgCGCCCGC-UGccgGGCGg -3'
miRNA:   3'- -GAGCaGCagCA-GCGGGCGuACa--UCGC- -5'
12866 5' -56.3 NC_003387.1 + 20254 0.67 0.611127
Target:  5'- --gGUCGaCGcaaaCGCCCGCAUGgcGCu -3'
miRNA:   3'- gagCAGCaGCa---GCGGGCGUACauCGc -5'
12866 5' -56.3 NC_003387.1 + 50067 0.67 0.600305
Target:  5'- -gUGUCGUCGUacagcaCGCCgCGCcgGU-GCGg -3'
miRNA:   3'- gaGCAGCAGCA------GCGG-GCGuaCAuCGC- -5'
12866 5' -56.3 NC_003387.1 + 39746 0.68 0.578748
Target:  5'- gCUCGUCGUCGguggcCGCCCGguacgAGCc -3'
miRNA:   3'- -GAGCAGCAGCa----GCGGGCguacaUCGc -5'
12866 5' -56.3 NC_003387.1 + 6645 0.68 0.578748
Target:  5'- uCUUGggcUCGUCGUCGaCCCGCuca-AGCGc -3'
miRNA:   3'- -GAGC---AGCAGCAGC-GGGCGuacaUCGC- -5'
12866 5' -56.3 NC_003387.1 + 36340 0.68 0.5563
Target:  5'- gUCGUCGUCGaCugcgaaacgacggGCCUGCAUGacGGCGc -3'
miRNA:   3'- gAGCAGCAGCaG-------------CGGGCGUACa-UCGC- -5'
12866 5' -56.3 NC_003387.1 + 737 0.68 0.53621
Target:  5'- cCUgGcCGUCGgugCGCgCGaCGUGUGGCGc -3'
miRNA:   3'- -GAgCaGCAGCa--GCGgGC-GUACAUCGC- -5'
12866 5' -56.3 NC_003387.1 + 2876 0.69 0.515343
Target:  5'- cCUCGUCGuacaUCGgcaggaacUCGCUCGCcgGgcGCGg -3'
miRNA:   3'- -GAGCAGC----AGC--------AGCGGGCGuaCauCGC- -5'
12866 5' -56.3 NC_003387.1 + 13006 0.69 0.488726
Target:  5'- -gCGUCGUCGggcaaggucgacagCGCCCGCAcGUcGCu -3'
miRNA:   3'- gaGCAGCAGCa-------------GCGGGCGUaCAuCGc -5'
12866 5' -56.3 NC_003387.1 + 5194 0.69 0.464743
Target:  5'- cCUCGcCGUaacgGUCGCCCuGCAUGaacuGCGg -3'
miRNA:   3'- -GAGCaGCAg---CAGCGGG-CGUACau--CGC- -5'
12866 5' -56.3 NC_003387.1 + 18580 0.69 0.464743
Target:  5'- gUCGacccaggCGUCaggGUCGCCCGCcucgGUGGCGc -3'
miRNA:   3'- gAGCa------GCAG---CAGCGGGCGua--CAUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.