miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12868 3' -50.8 NC_003387.1 + 1136 0.66 0.924382
Target:  5'- aCGguGUGCUCGgcGcCugCGUgcaUGCg -3'
miRNA:   3'- aGCuuCACGAGCuuC-GugGCAa--ACGg -5'
12868 3' -50.8 NC_003387.1 + 51368 0.66 0.918202
Target:  5'- gCGAGGUGCcgUGGAGCgagGCCGaUUUcggauucgGCCg -3'
miRNA:   3'- aGCUUCACGa-GCUUCG---UGGC-AAA--------CGG- -5'
12868 3' -50.8 NC_003387.1 + 24259 0.66 0.918202
Target:  5'- gUGAAGUGCU----GCGCCGcgaucUGCCg -3'
miRNA:   3'- aGCUUCACGAgcuuCGUGGCaa---ACGG- -5'
12868 3' -50.8 NC_003387.1 + 13651 0.66 0.918202
Target:  5'- gUCGgcGgcgGCUCGGucgccgagGGCGCCGUcgacGCUa -3'
miRNA:   3'- -AGCuuCa--CGAGCU--------UCGUGGCAaa--CGG- -5'
12868 3' -50.8 NC_003387.1 + 21670 0.66 0.918202
Target:  5'- gUCGccGGUGCcaUCGGcgccGGUGCCGUgcugGCCg -3'
miRNA:   3'- -AGCu-UCACG--AGCU----UCGUGGCAaa--CGG- -5'
12868 3' -50.8 NC_003387.1 + 26673 0.66 0.911728
Target:  5'- gCGAAuGUGguaCUCGAugugcGGCGCCGUcgGCg -3'
miRNA:   3'- aGCUU-CAC---GAGCU-----UCGUGGCAaaCGg -5'
12868 3' -50.8 NC_003387.1 + 43379 0.66 0.909729
Target:  5'- gUCGAcguccuGGUGCUCGAcgacgucgaccucgGGgGCCGUgucaGUCg -3'
miRNA:   3'- -AGCU------UCACGAGCU--------------UCgUGGCAaa--CGG- -5'
12868 3' -50.8 NC_003387.1 + 2792 0.66 0.904962
Target:  5'- gCGAc--GUUCGAgGGCAaacCCGUUUGCCc -3'
miRNA:   3'- aGCUucaCGAGCU-UCGU---GGCAAACGG- -5'
12868 3' -50.8 NC_003387.1 + 24701 0.66 0.904962
Target:  5'- cCGAGGaucgGCUUGccGCGCuCGUcggUGCCc -3'
miRNA:   3'- aGCUUCa---CGAGCuuCGUG-GCAa--ACGG- -5'
12868 3' -50.8 NC_003387.1 + 52250 0.66 0.904962
Target:  5'- aCGAGcaGCUCGcgccGGuCGCCGUcgGCCg -3'
miRNA:   3'- aGCUUcaCGAGCu---UC-GUGGCAaaCGG- -5'
12868 3' -50.8 NC_003387.1 + 18089 0.66 0.903574
Target:  5'- aCGguGUGCcCGAGGCugCGcagguaggcgGCCa -3'
miRNA:   3'- aGCuuCACGaGCUUCGugGCaaa-------CGG- -5'
12868 3' -50.8 NC_003387.1 + 2337 0.66 0.897908
Target:  5'- cUCGGcGGUG-UCGAGGcCGCCGUcgGCg -3'
miRNA:   3'- -AGCU-UCACgAGCUUC-GUGGCAaaCGg -5'
12868 3' -50.8 NC_003387.1 + 5142 0.66 0.897908
Target:  5'- aCGAGGggcGCUCG--GCGCCGgucggUGCa -3'
miRNA:   3'- aGCUUCa--CGAGCuuCGUGGCaa---ACGg -5'
12868 3' -50.8 NC_003387.1 + 47949 0.66 0.897908
Target:  5'- aCGccGUGUgggccgCGAAGCACCGcgaGCUg -3'
miRNA:   3'- aGCuuCACGa-----GCUUCGUGGCaaaCGG- -5'
12868 3' -50.8 NC_003387.1 + 48768 0.66 0.897908
Target:  5'- aCGcGGUGCUCGgcGCAgCCagcucGCCg -3'
miRNA:   3'- aGCuUCACGAGCuuCGU-GGcaaa-CGG- -5'
12868 3' -50.8 NC_003387.1 + 32285 0.67 0.890568
Target:  5'- gUGggG-GCgcgaGGAGCACCGgcgGCUg -3'
miRNA:   3'- aGCuuCaCGag--CUUCGUGGCaaaCGG- -5'
12868 3' -50.8 NC_003387.1 + 36876 0.67 0.866892
Target:  5'- aCGAuuGUGCUCGccgacGGGCACCGc--GUCg -3'
miRNA:   3'- aGCUu-CACGAGC-----UUCGUGGCaaaCGG- -5'
12868 3' -50.8 NC_003387.1 + 29579 0.67 0.85847
Target:  5'- gUCGgcGUGacgUCGAuGaCACCG-UUGCCg -3'
miRNA:   3'- -AGCuuCACg--AGCUuC-GUGGCaAACGG- -5'
12868 3' -50.8 NC_003387.1 + 51206 0.68 0.849795
Target:  5'- cCGAGGUGCU--GAGCcuGCaCGUcgGCCg -3'
miRNA:   3'- aGCUUCACGAgcUUCG--UG-GCAaaCGG- -5'
12868 3' -50.8 NC_003387.1 + 2991 0.68 0.849795
Target:  5'- cCG-AGUGCUCaAGGCAuCCGcgUUGCg -3'
miRNA:   3'- aGCuUCACGAGcUUCGU-GGCa-AACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.