miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12868 5' -60.8 NC_003387.1 + 50687 0.66 0.434617
Target:  5'- gCCAGCUCGgcgaCGGcgGCcgUCgGCGGCaCCGa -3'
miRNA:   3'- -GGUCGAGC----GCCa-CGa-AG-CGCCG-GGUg -5'
12868 5' -60.8 NC_003387.1 + 3826 0.66 0.434617
Target:  5'- gCAGCUCGCaGGcGaUUUCcgcgGUGGCCCAg -3'
miRNA:   3'- gGUCGAGCG-CCaC-GAAG----CGCCGGGUg -5'
12868 5' -60.8 NC_003387.1 + 38426 0.66 0.434617
Target:  5'- gCGGCUggCGCuGGUGCccaagaaGGCCCACg -3'
miRNA:   3'- gGUCGA--GCG-CCACGaagcg--CCGGGUG- -5'
12868 5' -60.8 NC_003387.1 + 11415 0.66 0.434617
Target:  5'- aUCGGCcccgaggugcugUCGuCGGUGC-UCGUG-CCCGCg -3'
miRNA:   3'- -GGUCG------------AGC-GCCACGaAGCGCcGGGUG- -5'
12868 5' -60.8 NC_003387.1 + 15967 0.66 0.434617
Target:  5'- aUguGCUUGCGGUGgaggacaaUUCG-GGCCgCACu -3'
miRNA:   3'- -GguCGAGCGCCACg-------AAGCgCCGG-GUG- -5'
12868 5' -60.8 NC_003387.1 + 40423 0.66 0.434617
Target:  5'- --cGCUCGUgccGGUGCc---CGGCCCGCu -3'
miRNA:   3'- gguCGAGCG---CCACGaagcGCCGGGUG- -5'
12868 5' -60.8 NC_003387.1 + 10185 0.66 0.425337
Target:  5'- gCCAGCUCgGCGucgGUcaUGCGGgCCGCg -3'
miRNA:   3'- -GGUCGAG-CGCca-CGaaGCGCCgGGUG- -5'
12868 5' -60.8 NC_003387.1 + 36606 0.66 0.424416
Target:  5'- cCCGGCguucgacUCGCGGcUGCUggccgcCGCGauGCCCGa -3'
miRNA:   3'- -GGUCG-------AGCGCC-ACGAa-----GCGC--CGGGUg -5'
12868 5' -60.8 NC_003387.1 + 26691 0.66 0.422576
Target:  5'- gCAGCUCGCGcUGCUcgucgacgccgucgUgCGCGGCgCGa -3'
miRNA:   3'- gGUCGAGCGCcACGA--------------A-GCGCCGgGUg -5'
12868 5' -60.8 NC_003387.1 + 41749 0.66 0.416176
Target:  5'- cCCGGCUggcCGCGGUGUggUGCGaCCUcgACg -3'
miRNA:   3'- -GGUCGA---GCGCCACGaaGCGCcGGG--UG- -5'
12868 5' -60.8 NC_003387.1 + 3979 0.66 0.407136
Target:  5'- cUCGGCgaccCGCGGgucaugGaCUcgUCGCGGCgCACg -3'
miRNA:   3'- -GGUCGa---GCGCCa-----C-GA--AGCGCCGgGUG- -5'
12868 5' -60.8 NC_003387.1 + 43371 0.66 0.404449
Target:  5'- aCCGGCUCGUcgacguccuGGUGCUcgacgacgucgaccUCGgGGgCCGu -3'
miRNA:   3'- -GGUCGAGCG---------CCACGA--------------AGCgCCgGGUg -5'
12868 5' -60.8 NC_003387.1 + 19656 0.66 0.398221
Target:  5'- --cGCUCGCGGcGCUUgGCGcGCaCC-Cg -3'
miRNA:   3'- gguCGAGCGCCaCGAAgCGC-CG-GGuG- -5'
12868 5' -60.8 NC_003387.1 + 41990 0.66 0.398221
Target:  5'- gCC-GC-CGCGGUGCUcaaGCGGUggggCCGCc -3'
miRNA:   3'- -GGuCGaGCGCCACGAag-CGCCG----GGUG- -5'
12868 5' -60.8 NC_003387.1 + 27588 0.66 0.398221
Target:  5'- aUCGGCUgCGCGGUGUgcCGCugguacgagGGCCUcgACg -3'
miRNA:   3'- -GGUCGA-GCGCCACGaaGCG---------CCGGG--UG- -5'
12868 5' -60.8 NC_003387.1 + 8393 0.66 0.389432
Target:  5'- uCCAGUUgcgUGCGGUGU--CGgGGCCuCGCc -3'
miRNA:   3'- -GGUCGA---GCGCCACGaaGCgCCGG-GUG- -5'
12868 5' -60.8 NC_003387.1 + 51900 0.66 0.389432
Target:  5'- -aAGCUCGUcgaGGUGCUgcccgaGCuGGCCgACa -3'
miRNA:   3'- ggUCGAGCG---CCACGAag----CG-CCGGgUG- -5'
12868 5' -60.8 NC_003387.1 + 25941 0.67 0.380771
Target:  5'- cCCAcauGCU-GCGGUGcCUUCgGCGGCCa-- -3'
miRNA:   3'- -GGU---CGAgCGCCAC-GAAG-CGCCGGgug -5'
12868 5' -60.8 NC_003387.1 + 44412 0.67 0.380771
Target:  5'- gCGGCUgaCGCuGUGC-UCGCGaugcuGCCCGCc -3'
miRNA:   3'- gGUCGA--GCGcCACGaAGCGC-----CGGGUG- -5'
12868 5' -60.8 NC_003387.1 + 34714 0.67 0.380771
Target:  5'- aCAGC-CGCgGGUGCUugugcgcgaaacUCGaCGGCacCCACu -3'
miRNA:   3'- gGUCGaGCG-CCACGA------------AGC-GCCG--GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.