miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1287 3' -56.3 NC_001317.1 + 5974 0.66 0.488333
Target:  5'- gCGGCUUgAGAGGCCGa--GAcCCGCAu -3'
miRNA:   3'- -GCCGGAgUUUCUGGCgggUUuGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 21790 0.66 0.488333
Target:  5'- uCGGCCUCAGAccaccGugCGCCa--GuuGCGa -3'
miRNA:   3'- -GCCGGAGUUU-----CugGCGGguuUggCGU- -5'
1287 3' -56.3 NC_001317.1 + 16460 0.66 0.488333
Target:  5'- gCGGUCgaccaggCGAcccGACCGCuuaaauccauCCAGACCGCGa -3'
miRNA:   3'- -GCCGGa------GUUu--CUGGCG----------GGUUUGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 6220 0.66 0.477723
Target:  5'- aCGGCCUCAccu-CUGaCCAucGCCGCAc -3'
miRNA:   3'- -GCCGGAGUuucuGGCgGGUu-UGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 19323 0.66 0.476668
Target:  5'- -aGCUgCAGAGugCGCUCGgaggacuGACCGCAu -3'
miRNA:   3'- gcCGGaGUUUCugGCGGGU-------UUGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 26966 0.66 0.455821
Target:  5'- aGGCauuggCUCGuuGACUGCCCugauuuugcuccaGAACUGCAg -3'
miRNA:   3'- gCCG-----GAGUuuCUGGCGGG-------------UUUGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 5924 0.67 0.426493
Target:  5'- gGGUCUC---GGCCuCUCAAGCCGCGc -3'
miRNA:   3'- gCCGGAGuuuCUGGcGGGUUUGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 27778 0.68 0.38701
Target:  5'- aGGCCUUu-GGGCaCGCauacgcgCCAAGCUGCAc -3'
miRNA:   3'- gCCGGAGuuUCUG-GCG-------GGUUUGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 877 0.68 0.369546
Target:  5'- uGGCCUCAccGGCCaaauacaCCC--GCCGCGg -3'
miRNA:   3'- gCCGGAGUuuCUGGc------GGGuuUGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 15720 0.68 0.369546
Target:  5'- aCGGCCacgCAu-GACCaCCUcGACCGCAa -3'
miRNA:   3'- -GCCGGa--GUuuCUGGcGGGuUUGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 12886 0.69 0.317216
Target:  5'- gCGGCCUCAGcuucacuGGuACUGUCU--GCCGCAc -3'
miRNA:   3'- -GCCGGAGUU-------UC-UGGCGGGuuUGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 15125 0.71 0.238024
Target:  5'- uGGgCUUAucGACCGCCCAcauGugCGCc -3'
miRNA:   3'- gCCgGAGUuuCUGGCGGGU---UugGCGu -5'
1287 3' -56.3 NC_001317.1 + 2326 0.74 0.152318
Target:  5'- uCGGCCUCGGcguguuccaguuGGugCGCUCAuucuacccGGCCGCAc -3'
miRNA:   3'- -GCCGGAGUU------------UCugGCGGGU--------UUGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 5069 0.74 0.143826
Target:  5'- gGGCgaCAAAGAgCG-CCAGACCGCAg -3'
miRNA:   3'- gCCGgaGUUUCUgGCgGGUUUGGCGU- -5'
1287 3' -56.3 NC_001317.1 + 9523 1.09 0.000328
Target:  5'- aCGGCCUCAAAGACCGCCCAAACCGCAa -3'
miRNA:   3'- -GCCGGAGUUUCUGGCGGGUUUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.