miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1287 5' -57.2 NC_001317.1 + 24767 0.68 0.317219
Target:  5'- -aUGCAGaaaccucaugGCGAcGGCuGCGCgCGUUGCu -3'
miRNA:   3'- acACGUCa---------UGCU-CCG-CGCGgGCAACG- -5'
1287 5' -57.2 NC_001317.1 + 17200 0.77 0.073698
Target:  5'- -cUGCAGUauugucgccgACGuGGCGCGCCUGuUUGCg -3'
miRNA:   3'- acACGUCA----------UGCuCCGCGCGGGC-AACG- -5'
1287 5' -57.2 NC_001317.1 + 17122 0.7 0.244349
Target:  5'- -aUGCAGgcguUACGcaaacAGGCGCGCCaCGUcgGCg -3'
miRNA:   3'- acACGUC----AUGC-----UCCGCGCGG-GCAa-CG- -5'
1287 5' -57.2 NC_001317.1 + 10316 0.66 0.405294
Target:  5'- gGUGguGUGCaaaGAGGCGgUGCCUGg--- -3'
miRNA:   3'- aCACguCAUG---CUCCGC-GCGGGCaacg -5'
1287 5' -57.2 NC_001317.1 + 9616 0.67 0.359376
Target:  5'- --aGCA--ACG-GGCGCGCCuCGUacUGCa -3'
miRNA:   3'- acaCGUcaUGCuCCGCGCGG-GCA--ACG- -5'
1287 5' -57.2 NC_001317.1 + 9559 1.11 0.000185
Target:  5'- aUGUGCAGUACGAGGCGCGCCCGUUGCu -3'
miRNA:   3'- -ACACGUCAUGCUCCGCGCGGGCAACG- -5'
1287 5' -57.2 NC_001317.1 + 9397 0.7 0.257722
Target:  5'- cGUGCGGcaUACGGGGUGCcgucggguGCCUGcugGCg -3'
miRNA:   3'- aCACGUC--AUGCUCCGCG--------CGGGCaa-CG- -5'
1287 5' -57.2 NC_001317.1 + 3577 0.69 0.26463
Target:  5'- --aGCAGccuUGAGGCGCGCCUGa--- -3'
miRNA:   3'- acaCGUCau-GCUCCGCGCGGGCaacg -5'
1287 5' -57.2 NC_001317.1 + 2896 0.66 0.443576
Target:  5'- --cGCAGaugcuucUGCGAGGCcaUGCCCGagGCg -3'
miRNA:   3'- acaCGUC-------AUGCUCCGc-GCGGGCaaCG- -5'
1287 5' -57.2 NC_001317.1 + 2070 0.67 0.386487
Target:  5'- gGUGCGgcuggccucGUAgGuGGCgcuGCGCCCGcUGCu -3'
miRNA:   3'- aCACGU---------CAUgCuCCG---CGCGGGCaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.