miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 3' -54.5 NC_003387.1 + 40903 0.67 0.714469
Target:  5'- aAGGcCGCGAUcGCGGUCGggCGGuGGCc -3'
miRNA:   3'- gUUC-GCGCUGuUGCUAGCa-GUC-CCGc -5'
12870 3' -54.5 NC_003387.1 + 23407 0.67 0.704762
Target:  5'- -cAGCGCGGCcuggcgcucgugcccGCGGUCGccggggaaCAGGGCGu -3'
miRNA:   3'- guUCGCGCUGu--------------UGCUAGCa-------GUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 22026 0.67 0.703679
Target:  5'- aGAGCGCGGCGuCGAcauucCGU--GGGCGg -3'
miRNA:   3'- gUUCGCGCUGUuGCUa----GCAguCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 44019 0.67 0.703679
Target:  5'- uCGAGCGgcucguCGACGuCGGUCGgCAGcGGCGu -3'
miRNA:   3'- -GUUCGC------GCUGUuGCUAGCaGUC-CCGC- -5'
12870 3' -54.5 NC_003387.1 + 28070 0.67 0.703679
Target:  5'- -cGGCGCuGGCGACcucgCGcagCAGGGCGa -3'
miRNA:   3'- guUCGCG-CUGUUGcua-GCa--GUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 39711 0.67 0.700428
Target:  5'- gCGGGCGCugucgaccuugcccGACGACGccuuaagcucGUCGUCGGuGGCc -3'
miRNA:   3'- -GUUCGCG--------------CUGUUGC----------UAGCAGUC-CCGc -5'
12870 3' -54.5 NC_003387.1 + 13653 0.67 0.69282
Target:  5'- -cGGCgGCGGCu-CGGUCGcCgAGGGCGc -3'
miRNA:   3'- guUCG-CGCUGuuGCUAGCaG-UCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 22593 0.67 0.69282
Target:  5'- -cGGUGCGGCcACGGUCGaagcUCAGGcccuuGCGg -3'
miRNA:   3'- guUCGCGCUGuUGCUAGC----AGUCC-----CGC- -5'
12870 3' -54.5 NC_003387.1 + 3849 0.67 0.681901
Target:  5'- gUAGGCgGCGcCGACGAUCcGgcugcgcacCAGGGCGu -3'
miRNA:   3'- -GUUCG-CGCuGUUGCUAG-Ca--------GUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 46985 0.67 0.681901
Target:  5'- gCGGGCGaCGACGACGAgCG-C-GGGCc -3'
miRNA:   3'- -GUUCGC-GCUGUUGCUaGCaGuCCCGc -5'
12870 3' -54.5 NC_003387.1 + 48215 0.67 0.670934
Target:  5'- --cGCGCaGCAGcCGGUCGagCGGGGCc -3'
miRNA:   3'- guuCGCGcUGUU-GCUAGCa-GUCCCGc -5'
12870 3' -54.5 NC_003387.1 + 30987 0.67 0.670934
Target:  5'- cCGAGCGCcucGGCGACGAUUuccacgaccagGUCGGcGCGg -3'
miRNA:   3'- -GUUCGCG---CUGUUGCUAG-----------CAGUCcCGC- -5'
12870 3' -54.5 NC_003387.1 + 34139 0.67 0.670934
Target:  5'- --uGCGCGAacuCGACGAgcacCAGGGCGu -3'
miRNA:   3'- guuCGCGCU---GUUGCUagcaGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 1505 0.67 0.670934
Target:  5'- -cAGCGUGcacCAGcCGGUCGugaagUCGGGGCGg -3'
miRNA:   3'- guUCGCGCu--GUU-GCUAGC-----AGUCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 16052 0.67 0.670934
Target:  5'- -uGGCGaCGACAugauccGCGAggUCGUC-GGGCa -3'
miRNA:   3'- guUCGC-GCUGU------UGCU--AGCAGuCCCGc -5'
12870 3' -54.5 NC_003387.1 + 10017 0.67 0.668736
Target:  5'- cCGGGCGaCGACGACGAcgagccgaagcgCGcCgAGGGCGc -3'
miRNA:   3'- -GUUCGC-GCUGUUGCUa-----------GCaG-UCCCGC- -5'
12870 3' -54.5 NC_003387.1 + 34535 0.68 0.637857
Target:  5'- gAGGCGCaccucGCAGcCGAUCGUCAgcGGGuCGa -3'
miRNA:   3'- gUUCGCGc----UGUU-GCUAGCAGU--CCC-GC- -5'
12870 3' -54.5 NC_003387.1 + 27537 0.68 0.626806
Target:  5'- --uGcCGCGGCGGCGG-CGcCGGGGCc -3'
miRNA:   3'- guuC-GCGCUGUUGCUaGCaGUCCCGc -5'
12870 3' -54.5 NC_003387.1 + 18570 0.68 0.615761
Target:  5'- aCAGGUGCGGguCGACccaggCGUCAGGGUc -3'
miRNA:   3'- -GUUCGCGCU--GUUGcua--GCAGUCCCGc -5'
12870 3' -54.5 NC_003387.1 + 5446 0.68 0.615761
Target:  5'- aGGGCGcCGACGGCGGccaaagCGgugacCAGGGCa -3'
miRNA:   3'- gUUCGC-GCUGUUGCUa-----GCa----GUCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.