miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 5' -61.2 NC_003387.1 + 10341 0.66 0.411536
Target:  5'- aGGCaGCCGuugcgcagcccgcacAUGAUCCgcacGGcCUGCGuCACCAg -3'
miRNA:   3'- -CCG-CGGC---------------UGCUAGG----CC-GACGC-GUGGU- -5'
12870 5' -61.2 NC_003387.1 + 3645 0.66 0.407957
Target:  5'- -uCGCCGuCGA-CCGGCUcGUGCcCCGg -3'
miRNA:   3'- ccGCGGCuGCUaGGCCGA-CGCGuGGU- -5'
12870 5' -61.2 NC_003387.1 + 7313 0.66 0.407957
Target:  5'- cGGgGCCGuACcugUCGGCUGCGC-UCAa -3'
miRNA:   3'- -CCgCGGC-UGcuaGGCCGACGCGuGGU- -5'
12870 5' -61.2 NC_003387.1 + 39065 0.66 0.407957
Target:  5'- cGGCGCCcucGGCGA-CCGaGCcGC-CGCCGa -3'
miRNA:   3'- -CCGCGG---CUGCUaGGC-CGaCGcGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 51358 0.66 0.407957
Target:  5'- aGCGCCGACGGcgaggugCCGuGgaGCGagGCCGa -3'
miRNA:   3'- cCGCGGCUGCUa------GGC-CgaCGCg-UGGU- -5'
12870 5' -61.2 NC_003387.1 + 37795 0.66 0.407957
Target:  5'- uGCGCCGcUGcgCCGGUagccGCGCAgCCGu -3'
miRNA:   3'- cCGCGGCuGCuaGGCCGa---CGCGU-GGU- -5'
12870 5' -61.2 NC_003387.1 + 10078 0.66 0.399097
Target:  5'- cGGCGaccaggaCGACGGUCggcaaguucaUGGCaaUGCGCGCUg -3'
miRNA:   3'- -CCGCg------GCUGCUAG----------GCCG--ACGCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 45768 0.66 0.399097
Target:  5'- cGCGCUGugGcgCCugcccgccGCUGCGCagGCCGc -3'
miRNA:   3'- cCGCGGCugCuaGGc-------CGACGCG--UGGU- -5'
12870 5' -61.2 NC_003387.1 + 7034 0.66 0.399097
Target:  5'- aGGCGCUGGCGAcaagccaggacgUCaaGCggGCGCugCGg -3'
miRNA:   3'- -CCGCGGCUGCU------------AGgcCGa-CGCGugGU- -5'
12870 5' -61.2 NC_003387.1 + 18982 0.66 0.399097
Target:  5'- cGGCGagcauCGACGAgCUGGCgGCGUggGCCu -3'
miRNA:   3'- -CCGCg----GCUGCUaGGCCGaCGCG--UGGu -5'
12870 5' -61.2 NC_003387.1 + 31250 0.66 0.398217
Target:  5'- cGGC-CCGACcgGcgCgGGCUGCGCcagcgggGCCGg -3'
miRNA:   3'- -CCGcGGCUG--CuaGgCCGACGCG-------UGGU- -5'
12870 5' -61.2 NC_003387.1 + 31959 0.66 0.390361
Target:  5'- aGgGCCGACGcgCCuuGCagGCGCAUCGa -3'
miRNA:   3'- cCgCGGCUGCuaGGc-CGa-CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 21481 0.66 0.390361
Target:  5'- cGCGCCGGuCGggCCGGgCUGguucguguCGCugCAc -3'
miRNA:   3'- cCGCGGCU-GCuaGGCC-GAC--------GCGugGU- -5'
12870 5' -61.2 NC_003387.1 + 44650 0.66 0.390361
Target:  5'- cGGCcUCGGCGAUCCuggccgaggGGCUGCcggugcuCGCCAa -3'
miRNA:   3'- -CCGcGGCUGCUAGG---------CCGACGc------GUGGU- -5'
12870 5' -61.2 NC_003387.1 + 22246 0.66 0.390361
Target:  5'- cGGCGCCGACGGgaagcacUUGGUgcacagcaGgGCGCCGu -3'
miRNA:   3'- -CCGCGGCUGCUa------GGCCGa-------CgCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 11 0.66 0.390361
Target:  5'- gGGCGCCG-CGAUCguucGCgGgGCACCc -3'
miRNA:   3'- -CCGCGGCuGCUAGgc--CGaCgCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 31051 0.66 0.390361
Target:  5'- gGGCGUCGGCGAacacgugCuCGGCcGC-CGCCGc -3'
miRNA:   3'- -CCGCGGCUGCUa------G-GCCGaCGcGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 14922 0.66 0.390361
Target:  5'- cGCGCUGcuGCGA-CCGcggguGCUGCGC-CCAg -3'
miRNA:   3'- cCGCGGC--UGCUaGGC-----CGACGCGuGGU- -5'
12870 5' -61.2 NC_003387.1 + 12709 0.66 0.390361
Target:  5'- cGGCGUCGAguacaCGAUCUGGCgGCagACCu -3'
miRNA:   3'- -CCGCGGCU-----GCUAGGCCGaCGcgUGGu -5'
12870 5' -61.2 NC_003387.1 + 1628 0.66 0.38175
Target:  5'- gGGCaGCCu-CGcgCgGGUUGCGCGCUg -3'
miRNA:   3'- -CCG-CGGcuGCuaGgCCGACGCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.