miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12871 3' -58 NC_003387.1 + 12601 0.66 0.57108
Target:  5'- cCCGUCGGGCCGGgc--GCUCGa--- -3'
miRNA:   3'- uGGCAGCUCGGCCacuaCGAGUccag -5'
12871 3' -58 NC_003387.1 + 16003 0.66 0.539119
Target:  5'- -gCGUCGAgGCCGGgca-GCUCgaccGGGUCg -3'
miRNA:   3'- ugGCAGCU-CGGCCacuaCGAG----UCCAG- -5'
12871 3' -58 NC_003387.1 + 19234 0.66 0.528597
Target:  5'- -gCGUCGcGCCGGgccaGGUGCUCAacaucGUCg -3'
miRNA:   3'- ugGCAGCuCGGCCa---CUACGAGUc----CAG- -5'
12871 3' -58 NC_003387.1 + 21305 0.67 0.497516
Target:  5'- gGCCGUCGAGCa-GUGgcGCgugagCGGGg- -3'
miRNA:   3'- -UGGCAGCUCGgcCACuaCGa----GUCCag -5'
12871 3' -58 NC_003387.1 + 47564 0.67 0.467281
Target:  5'- gGCCGcacucgCGuGUCGGUGAaGCUCgaccgaucGGGUCg -3'
miRNA:   3'- -UGGCa-----GCuCGGCCACUaCGAG--------UCCAG- -5'
12871 3' -58 NC_003387.1 + 2195 0.67 0.467281
Target:  5'- cACCG-CGGGCUcaggGGUGccucGUGCUCGccGGUCa -3'
miRNA:   3'- -UGGCaGCUCGG----CCAC----UACGAGU--CCAG- -5'
12871 3' -58 NC_003387.1 + 21483 0.68 0.428504
Target:  5'- cGCCgGUCGGGCCGGgcugGUUCGuGUCg -3'
miRNA:   3'- -UGG-CAGCUCGGCCacuaCGAGUcCAG- -5'
12871 3' -58 NC_003387.1 + 29830 0.69 0.391693
Target:  5'- gGCCGUCGcGUCGGUcuUGCcgGGGUCa -3'
miRNA:   3'- -UGGCAGCuCGGCCAcuACGagUCCAG- -5'
12871 3' -58 NC_003387.1 + 4571 0.7 0.340486
Target:  5'- gACCGcgCGGGCCucGGUGGcgcgcUGCgcgCGGGUCu -3'
miRNA:   3'- -UGGCa-GCUCGG--CCACU-----ACGa--GUCCAG- -5'
12871 3' -58 NC_003387.1 + 1430 0.71 0.301649
Target:  5'- cGCCGaCGAGCUGGcaggGCUCgGGGUCg -3'
miRNA:   3'- -UGGCaGCUCGGCCacuaCGAG-UCCAG- -5'
12871 3' -58 NC_003387.1 + 24922 0.71 0.273107
Target:  5'- cUCGUCGGgcaccGCCGG-GGUGCUCAGccGUCa -3'
miRNA:   3'- uGGCAGCU-----CGGCCaCUACGAGUC--CAG- -5'
12871 3' -58 NC_003387.1 + 10880 0.72 0.259667
Target:  5'- cGCCGUCGGccGCUGGccgaccagGAUGCUCAGcucGUCg -3'
miRNA:   3'- -UGGCAGCU--CGGCCa-------CUACGAGUC---CAG- -5'
12871 3' -58 NC_003387.1 + 19563 0.73 0.216851
Target:  5'- aACCuGUCGAGUCGGcUGGcgagccUGCUCGGcGUCg -3'
miRNA:   3'- -UGG-CAGCUCGGCC-ACU------ACGAGUC-CAG- -5'
12871 3' -58 NC_003387.1 + 16065 0.77 0.119726
Target:  5'- gUCGgCGAGCCGGUGAUGCcacUCGGGg- -3'
miRNA:   3'- uGGCaGCUCGGCCACUACG---AGUCCag -5'
12871 3' -58 NC_003387.1 + 29715 0.78 0.101283
Target:  5'- -gCGUCGAGCCGGUGAUGC--GGGcCu -3'
miRNA:   3'- ugGCAGCUCGGCCACUACGagUCCaG- -5'
12871 3' -58 NC_003387.1 + 45079 0.79 0.085542
Target:  5'- gGCCGUCcuGGGCCGGUGuucgGCggcCAGGUCg -3'
miRNA:   3'- -UGGCAG--CUCGGCCACua--CGa--GUCCAG- -5'
12871 3' -58 NC_003387.1 + 3690 1.09 0.000462
Target:  5'- aACCGUCGAGCCGGUGAUGCUCAGGUCg -3'
miRNA:   3'- -UGGCAGCUCGGCCACUACGAGUCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.