miRNA display CGI


Results 1 - 20 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12871 5' -59.1 NC_003387.1 + 10609 0.65 0.55101
Target:  5'- aCGGUCGCcucGGUCaugcaggACGCGAccgCGGCGGUg -3'
miRNA:   3'- cGCCGGUG---UCGG-------UGCGCUa--GCUGCCG- -5'
12871 5' -59.1 NC_003387.1 + 17033 0.65 0.548927
Target:  5'- gGCGGCUGCcgcccucGCCgggcgucgucgaggACGCGAUCGAgUGGg -3'
miRNA:   3'- -CGCCGGUGu------CGG--------------UGCGCUAGCU-GCCg -5'
12871 5' -59.1 NC_003387.1 + 15884 0.66 0.545807
Target:  5'- gGCGGUCACAGCgCcgccgccgggaucucACGCagGAUCGugaagcacgucGCGGUg -3'
miRNA:   3'- -CGCCGGUGUCG-G---------------UGCG--CUAGC-----------UGCCG- -5'
12871 5' -59.1 NC_003387.1 + 43665 0.66 0.545807
Target:  5'- aGUcGCCGaggagGGCgACGCGAUccuggcguggaucgcCGACGGCg -3'
miRNA:   3'- -CGcCGGUg----UCGgUGCGCUA---------------GCUGCCG- -5'
12871 5' -59.1 NC_003387.1 + 27132 0.66 0.544769
Target:  5'- cGUGGCCggGCAGCUcaucgagaaauccgaGCGCGucgCGAagcugcugccccuCGGCg -3'
miRNA:   3'- -CGCCGG--UGUCGG---------------UGCGCua-GCU-------------GCCG- -5'
12871 5' -59.1 NC_003387.1 + 18194 0.66 0.541656
Target:  5'- aGCGGgUcgacggGCAGCC-CGagGAUCG-CGGCg -3'
miRNA:   3'- -CGCCgG------UGUCGGuGCg-CUAGCuGCCG- -5'
12871 5' -59.1 NC_003387.1 + 738 0.66 0.541656
Target:  5'- cUGGCCGuCGGUgCGCGCGAcgUGugGcGCg -3'
miRNA:   3'- cGCCGGU-GUCG-GUGCGCUa-GCugC-CG- -5'
12871 5' -59.1 NC_003387.1 + 31365 0.66 0.541656
Target:  5'- cCGGCCAgGGCa--GCG-UCGGCuGCa -3'
miRNA:   3'- cGCCGGUgUCGgugCGCuAGCUGcCG- -5'
12871 5' -59.1 NC_003387.1 + 30064 0.66 0.541656
Target:  5'- aGCGcGCCcugACGGCCGCcgggGCGAgcaugcaguaccUCaACGGCg -3'
miRNA:   3'- -CGC-CGG---UGUCGGUG----CGCU------------AGcUGCCG- -5'
12871 5' -59.1 NC_003387.1 + 5931 0.66 0.541656
Target:  5'- gGgGGCUgacaACAGguuuCCGCGCGAggaccgaccUCGGCGGg -3'
miRNA:   3'- -CgCCGG----UGUC----GGUGCGCU---------AGCUGCCg -5'
12871 5' -59.1 NC_003387.1 + 45088 0.66 0.541656
Target:  5'- -gGGCCgguguucgGCGGCCAgGUcGUCGACGccGCg -3'
miRNA:   3'- cgCCGG--------UGUCGGUgCGcUAGCUGC--CG- -5'
12871 5' -59.1 NC_003387.1 + 10055 0.66 0.541656
Target:  5'- cGCGGUgucggccgguauCACGGCgGCGaccaGGaCGACGGUc -3'
miRNA:   3'- -CGCCG------------GUGUCGgUGCg---CUaGCUGCCG- -5'
12871 5' -59.1 NC_003387.1 + 43 0.66 0.541656
Target:  5'- aGgGGUCGCugaccuGCacaaACGCGcUCGAuCGGCg -3'
miRNA:   3'- -CgCCGGUGu-----CGg---UGCGCuAGCU-GCCG- -5'
12871 5' -59.1 NC_003387.1 + 8172 0.66 0.541656
Target:  5'- uCGGCCACuuCCugauccgcguGCGCGuuuUCGACaGCg -3'
miRNA:   3'- cGCCGGUGucGG----------UGCGCu--AGCUGcCG- -5'
12871 5' -59.1 NC_003387.1 + 25137 0.66 0.541656
Target:  5'- aGCGG-CACA-CCGCGCagccGAUCGG-GGCu -3'
miRNA:   3'- -CGCCgGUGUcGGUGCG----CUAGCUgCCG- -5'
12871 5' -59.1 NC_003387.1 + 15158 0.66 0.541656
Target:  5'- -gGGCagcgugaugaGCAGCCcgucgGCGaCGAUCG-CGGCu -3'
miRNA:   3'- cgCCGg---------UGUCGG-----UGC-GCUAGCuGCCG- -5'
12871 5' -59.1 NC_003387.1 + 42365 0.66 0.53855
Target:  5'- uGCGGCCcaGGCCcuuacCGgGGUCGgccguaucgacgccGCGGCu -3'
miRNA:   3'- -CGCCGGugUCGGu----GCgCUAGC--------------UGCCG- -5'
12871 5' -59.1 NC_003387.1 + 10944 0.66 0.53855
Target:  5'- cGCGGUCGacucugagacuuuccGCCGgGUGAucggaagaauaUCGGCGGCg -3'
miRNA:   3'- -CGCCGGUgu-------------CGGUgCGCU-----------AGCUGCCG- -5'
12871 5' -59.1 NC_003387.1 + 48063 0.66 0.53545
Target:  5'- gGCGGCguCGGCCGCuugGCGccgggccuuguccuuAUCGGCcuuGGCc -3'
miRNA:   3'- -CGCCGguGUCGGUG---CGC---------------UAGCUG---CCG- -5'
12871 5' -59.1 NC_003387.1 + 22908 0.66 0.531326
Target:  5'- --cGCgACGGCCaACGCGAcCGaaauuaGCGGCg -3'
miRNA:   3'- cgcCGgUGUCGG-UGCGCUaGC------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.