Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12872 | 3' | -49.1 | NC_003387.1 | + | 2713 | 1.13 | 0.002511 |
Target: 5'- cCCGUCGUGCUGUUGAUACCUCAACACu -3' miRNA: 3'- -GGCAGCACGACAACUAUGGAGUUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 2123 | 0.96 | 0.031028 |
Target: 5'- cCCcUCGUGCUGUUGAUACCUCAACAg -3' miRNA: 3'- -GGcAGCACGACAACUAUGGAGUUGUg -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 22805 | 0.96 | 0.032994 |
Target: 5'- cCCGUaGUGCUGUUGAUGCCUCAACAg -3' miRNA: 3'- -GGCAgCACGACAACUAUGGAGUUGUg -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 42650 | 0.73 | 0.692182 |
Target: 5'- aCCGUCGUcCUGgucgccgccgUGAUACCggcCGACACc -3' miRNA: 3'- -GGCAGCAcGACa---------ACUAUGGa--GUUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 22835 | 0.72 | 0.736829 |
Target: 5'- aCCG-CGgGCUGUUGAccCgUCAACACg -3' miRNA: 3'- -GGCaGCaCGACAACUauGgAGUUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 51800 | 0.71 | 0.758517 |
Target: 5'- aCCGUCGUGUUaggcGUcuUGAUGCa-CAGCGCg -3' miRNA: 3'- -GGCAGCACGA----CA--ACUAUGgaGUUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 481 | 0.7 | 0.819795 |
Target: 5'- gCCGUCagucucgacugGUGCUGUUGAcuCgUCAGCAg -3' miRNA: 3'- -GGCAG-----------CACGACAACUauGgAGUUGUg -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 18349 | 0.7 | 0.8477 |
Target: 5'- uCCGUUGUcGCcGUUGGguuugccgACCUCGACcACg -3' miRNA: 3'- -GGCAGCA-CGaCAACUa-------UGGAGUUG-UG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 26698 | 0.68 | 0.896642 |
Target: 5'- gCCGUCG-GCggGUUGGUggcgaugaACC-CGACACc -3' miRNA: 3'- -GGCAGCaCGa-CAACUA--------UGGaGUUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 36717 | 0.68 | 0.910702 |
Target: 5'- cCCgGUCGaGCUGcccg-GCCUCGACGCc -3' miRNA: 3'- -GG-CAGCaCGACaacuaUGGAGUUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 49956 | 0.68 | 0.916642 |
Target: 5'- cCCGcgaggacUCGggGCguuugUGUUGAcACCUCAACACc -3' miRNA: 3'- -GGC-------AGCa-CG-----ACAACUaUGGAGUUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 50293 | 0.68 | 0.917287 |
Target: 5'- gCCGUCGagaacgGCUGg----GCCgUCAACGCg -3' miRNA: 3'- -GGCAGCa-----CGACaacuaUGG-AGUUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 3399 | 0.68 | 0.923572 |
Target: 5'- cCCGaUCGagcaccUGCUGUcgaUGGUGCC-CGGCAUg -3' miRNA: 3'- -GGC-AGC------ACGACA---ACUAUGGaGUUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 23096 | 0.68 | 0.923572 |
Target: 5'- gCCGUCGcGCgugcgGUgcaccgacUGAUACC-CGACAUa -3' miRNA: 3'- -GGCAGCaCGa----CA--------ACUAUGGaGUUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 19407 | 0.67 | 0.929557 |
Target: 5'- gCGUCGUGCgggccUUGAUGCCaagggCcuuGCACa -3' miRNA: 3'- gGCAGCACGac---AACUAUGGa----Gu--UGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 20171 | 0.67 | 0.93524 |
Target: 5'- gCGUCGaggGCgcgGUUGAUgcgcugcugcGCCUC-GCACg -3' miRNA: 3'- gGCAGCa--CGa--CAACUA----------UGGAGuUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 33996 | 0.67 | 0.945214 |
Target: 5'- gCgGUCGacgacgagcugccUGCUGUcauacUGCCUCGGCACg -3' miRNA: 3'- -GgCAGC-------------ACGACAacu--AUGGAGUUGUG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 47466 | 0.67 | 0.9505 |
Target: 5'- -aGUCG-GCUGUUGAguucGCCgUCGGCcaGCg -3' miRNA: 3'- ggCAGCaCGACAACUa---UGG-AGUUG--UG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 42082 | 0.66 | 0.955 |
Target: 5'- gCG-CGUGCUGcgGGUGCC-CGGCuCg -3' miRNA: 3'- gGCaGCACGACaaCUAUGGaGUUGuG- -5' |
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12872 | 3' | -49.1 | NC_003387.1 | + | 23591 | 0.66 | 0.960822 |
Target: 5'- aUGUCGgGCuccuauccgcuggggUGUUGAUACCcCAACAg -3' miRNA: 3'- gGCAGCaCG---------------ACAACUAUGGaGUUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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