Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12873 | 5' | -61.5 | NC_003387.1 | + | 2201 | 1.1 | 0.000193 |
Target: 5'- gGGCUCAGGGGUGCCUCGUGCUCGCCGg -3' miRNA: 3'- -CCGAGUCCCCACGGAGCACGAGCGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 43346 | 0.77 | 0.073533 |
Target: 5'- cGcCUCGGGGGUcGCCUCGgccgccaccgGCUCGUCGa -3' miRNA: 3'- cC-GAGUCCCCA-CGGAGCa---------CGAGCGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 12910 | 0.76 | 0.077711 |
Target: 5'- cGGCgUGGGGGUGCCUagUGgugGCUCGUCGg -3' miRNA: 3'- -CCGaGUCCCCACGGA--GCa--CGAGCGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 3413 | 0.76 | 0.079885 |
Target: 5'- uGCUCGGGGccGUGCCcucggCGUGCUCGgCGa -3' miRNA: 3'- cCGAGUCCC--CACGGa----GCACGAGCgGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 1763 | 0.75 | 0.091651 |
Target: 5'- cGGCUCGGGGGcGCUUCGcGCUgGCg- -3' miRNA: 3'- -CCGAGUCCCCaCGGAGCaCGAgCGgc -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 44665 | 0.75 | 0.096804 |
Target: 5'- uGGCcgAGGGGcUGCCg-GUGCUCGCCa -3' miRNA: 3'- -CCGagUCCCC-ACGGagCACGAGCGGc -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 13431 | 0.75 | 0.097867 |
Target: 5'- cGGC-CGGGGGcuUGCCgUCGUcgagcagcuugcccaGCUCGCCGa -3' miRNA: 3'- -CCGaGUCCCC--ACGG-AGCA---------------CGAGCGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 21621 | 0.74 | 0.110908 |
Target: 5'- cGCUCGGGGGUGCgUCGUGaUCggauucaaaacaGCCGc -3' miRNA: 3'- cCGAGUCCCCACGgAGCACgAG------------CGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 14886 | 0.74 | 0.117072 |
Target: 5'- gGGCgCAGGGGUGCC-CGacCUCGCuCGg -3' miRNA: 3'- -CCGaGUCCCCACGGaGCacGAGCG-GC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 10818 | 0.72 | 0.171688 |
Target: 5'- gGGCUCGGGcaaggcgaugacguuGGaGCUUCGccaGCUCGCCGa -3' miRNA: 3'- -CCGAGUCC---------------CCaCGGAGCa--CGAGCGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 3868 | 0.7 | 0.214314 |
Target: 5'- cGGCUgcgcacCAGGGcGUGCacgcCGUGCgucgCGCCGa -3' miRNA: 3'- -CCGA------GUCCC-CACGga--GCACGa---GCGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 27945 | 0.7 | 0.2312 |
Target: 5'- gGGCUCGgucGGGGcGCUcggCGUGCUCggcuugGCCGg -3' miRNA: 3'- -CCGAGU---CCCCaCGGa--GCACGAG------CGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 23745 | 0.7 | 0.2312 |
Target: 5'- aGCUUAGcGGGUGCgCUCGaGUuuUUGCCGg -3' miRNA: 3'- cCGAGUC-CCCACG-GAGCaCG--AGCGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 32838 | 0.69 | 0.26182 |
Target: 5'- uGGCUCAGGcccagcacGGUGUCUUGcaggGCgcccagCGCCGc -3' miRNA: 3'- -CCGAGUCC--------CCACGGAGCa---CGa-----GCGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 31737 | 0.69 | 0.26182 |
Target: 5'- aGGCgagUUAGGGGUGUcccugCUCGaccUGgUCGCCGa -3' miRNA: 3'- -CCG---AGUCCCCACG-----GAGC---ACgAGCGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 23818 | 0.68 | 0.274964 |
Target: 5'- gGGCUCGGGcGGUgGCC-CG-GCgcccgCGCCu -3' miRNA: 3'- -CCGAGUCC-CCA-CGGaGCaCGa----GCGGc -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 50550 | 0.68 | 0.292833 |
Target: 5'- uGGCUCGGGGGgcGCUUUGUGUUgacaccucaacagGCCGc -3' miRNA: 3'- -CCGAGUCCCCa-CGGAGCACGAg------------CGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 15543 | 0.68 | 0.295661 |
Target: 5'- cGCUC-GGGGUGCCgg--GC-CGCCa -3' miRNA: 3'- cCGAGuCCCCACGGagcaCGaGCGGc -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 1446 | 0.67 | 0.31755 |
Target: 5'- gGGCUC-GGGGU-CgUCGUcCUCGUCGa -3' miRNA: 3'- -CCGAGuCCCCAcGgAGCAcGAGCGGC- -5' |
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12873 | 5' | -61.5 | NC_003387.1 | + | 52062 | 0.66 | 0.399097 |
Target: 5'- gGGCU-GGGGGaGCacaUCGUGCagGCCc -3' miRNA: 3'- -CCGAgUCCCCaCGg--AGCACGagCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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