miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12874 3' -60.9 NC_003387.1 + 27669 0.66 0.454038
Target:  5'- cCGC-UGG-CCGucaGCCGCGGGUaacGGUCa -3'
miRNA:   3'- -GCGuACUaGGC---CGGCGCCCAga-CCGG- -5'
12874 3' -60.9 NC_003387.1 + 19340 0.66 0.454038
Target:  5'- gCGCGgcGAgaacCUGGCCggGCGGGcUCUGGUUg -3'
miRNA:   3'- -GCGUa-CUa---GGCCGG--CGCCC-AGACCGG- -5'
12874 3' -60.9 NC_003387.1 + 6824 0.66 0.452141
Target:  5'- uGCA-GAUCgGGCgGCaGGUCgaucgcccgcucGGCCg -3'
miRNA:   3'- gCGUaCUAGgCCGgCGcCCAGa-----------CCGG- -5'
12874 3' -60.9 NC_003387.1 + 42716 0.66 0.444593
Target:  5'- uCGuCGUcgcCCGGCCGCGGGaacgGGUCg -3'
miRNA:   3'- -GC-GUAcuaGGCCGGCGCCCaga-CCGG- -5'
12874 3' -60.9 NC_003387.1 + 48962 0.66 0.444593
Target:  5'- uGCGUGAgCUGGCgaucgugcaCGCGGGcaugcGGCCg -3'
miRNA:   3'- gCGUACUaGGCCG---------GCGCCCaga--CCGG- -5'
12874 3' -60.9 NC_003387.1 + 44949 0.66 0.43526
Target:  5'- uCGCGaagGcUCaGGCCGCGGcUCaGGCCg -3'
miRNA:   3'- -GCGUa--CuAGgCCGGCGCCcAGaCCGG- -5'
12874 3' -60.9 NC_003387.1 + 48216 0.66 0.434333
Target:  5'- gCGCAgcagCCGGucgagcggggccuCCGCGGG-CUcGGCCu -3'
miRNA:   3'- -GCGUacuaGGCC-------------GGCGCCCaGA-CCGG- -5'
12874 3' -60.9 NC_003387.1 + 37904 0.66 0.426041
Target:  5'- gGuCGUGAUCgugCGcGCCGUGGGUC-GGUg -3'
miRNA:   3'- gC-GUACUAG---GC-CGGCGCCCAGaCCGg -5'
12874 3' -60.9 NC_003387.1 + 20269 0.66 0.426041
Target:  5'- cCGCAUGGcgCUaGGCacuGCGGGccgaUCUGGCg -3'
miRNA:   3'- -GCGUACUa-GG-CCGg--CGCCC----AGACCGg -5'
12874 3' -60.9 NC_003387.1 + 35484 0.66 0.424211
Target:  5'- cCGCGUGAgugacagcaagCGGCCGUGGug--GGCCg -3'
miRNA:   3'- -GCGUACUag---------GCCGGCGCCcagaCCGG- -5'
12874 3' -60.9 NC_003387.1 + 28142 0.66 0.416939
Target:  5'- gCGCGUGAUUgaGGCCGUcGGUgUUGaGCCc -3'
miRNA:   3'- -GCGUACUAGg-CCGGCGcCCA-GAC-CGG- -5'
12874 3' -60.9 NC_003387.1 + 22164 0.66 0.416939
Target:  5'- gCGCGUa--CCGGCCGCGGcggcgguccauGUCggGGCg -3'
miRNA:   3'- -GCGUAcuaGGCCGGCGCC-----------CAGa-CCGg -5'
12874 3' -60.9 NC_003387.1 + 6367 0.66 0.416939
Target:  5'- gCGCuUGGcCuCGGCCGCGGG-CgacGCCu -3'
miRNA:   3'- -GCGuACUaG-GCCGGCGCCCaGac-CGG- -5'
12874 3' -60.9 NC_003387.1 + 36830 0.66 0.407957
Target:  5'- uGCGUGAgaucCCGGCgGCGGcG-CUGuGaCCg -3'
miRNA:   3'- gCGUACUa---GGCCGgCGCC-CaGAC-C-GG- -5'
12874 3' -60.9 NC_003387.1 + 7392 0.67 0.39036
Target:  5'- uGCAcgGAU-CGGCCGCggccGGGUCUuGCUg -3'
miRNA:   3'- gCGUa-CUAgGCCGGCG----CCCAGAcCGG- -5'
12874 3' -60.9 NC_003387.1 + 27111 0.67 0.39036
Target:  5'- gGCGUauUCacgaGGCacuGCGGGUCgaGGCCg -3'
miRNA:   3'- gCGUAcuAGg---CCGg--CGCCCAGa-CCGG- -5'
12874 3' -60.9 NC_003387.1 + 31957 0.67 0.38175
Target:  5'- uCGCAUcc-CCGGCCGCaaGGUC-GGUCg -3'
miRNA:   3'- -GCGUAcuaGGCCGGCGc-CCAGaCCGG- -5'
12874 3' -60.9 NC_003387.1 + 31251 0.67 0.38175
Target:  5'- gGCccGA-CCGG-CGCGGG-CUGcGCCa -3'
miRNA:   3'- gCGuaCUaGGCCgGCGCCCaGAC-CGG- -5'
12874 3' -60.9 NC_003387.1 + 9246 0.67 0.375799
Target:  5'- cCGCAUGAaCCGccccgacaggacgucGCCGCcGGUCagcagcuugaccuUGGCCu -3'
miRNA:   3'- -GCGUACUaGGC---------------CGGCGcCCAG-------------ACCGG- -5'
12874 3' -60.9 NC_003387.1 + 44645 0.67 0.373267
Target:  5'- gGCGccGA-CCGGCaGCGGGUUagcgcgGGCCg -3'
miRNA:   3'- gCGUa-CUaGGCCGgCGCCCAGa-----CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.