miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12874 5' -54.6 NC_003387.1 + 7626 0.66 0.757389
Target:  5'- gUGACCgaugcgcgGggGCGCaaguucaaggugcacGGCGaCGUCGAGg -3'
miRNA:   3'- aACUGGa-------CuuUGCG---------------CUGCcGCAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 35124 0.66 0.753227
Target:  5'- -cGGCCUGcucaaGCGGCGGCcacugcagGUCGAc -3'
miRNA:   3'- aaCUGGACuuug-CGCUGCCG--------CAGCUc -5'
12874 5' -54.6 NC_003387.1 + 10034 0.66 0.742734
Target:  5'- -cGAgCcGAAGCGCGccgagggcGCGGUGUCGGc -3'
miRNA:   3'- aaCUgGaCUUUGCGC--------UGCCGCAGCUc -5'
12874 5' -54.6 NC_003387.1 + 40223 0.66 0.736383
Target:  5'- cUGACCUGGGACGaCGGCaGCccccgcaugcagcucGUCGuGa -3'
miRNA:   3'- aACUGGACUUUGC-GCUGcCG---------------CAGCuC- -5'
12874 5' -54.6 NC_003387.1 + 39923 0.66 0.732127
Target:  5'- -cGACUgcggucguugcGAGGCGCGcauuGCGGCGaUCGAGu -3'
miRNA:   3'- aaCUGGa----------CUUUGCGC----UGCCGC-AGCUC- -5'
12874 5' -54.6 NC_003387.1 + 32272 0.66 0.732127
Target:  5'- -aGGCCgacaAGGCGUGGgGGCG-CGAGg -3'
miRNA:   3'- aaCUGGac--UUUGCGCUgCCGCaGCUC- -5'
12874 5' -54.6 NC_003387.1 + 22665 0.66 0.731061
Target:  5'- -cGGCCgucaGGGCGCGcucguggGCGGUGUCGAc -3'
miRNA:   3'- aaCUGGac--UUUGCGC-------UGCCGCAGCUc -5'
12874 5' -54.6 NC_003387.1 + 24043 0.66 0.721418
Target:  5'- gUGGCCgUGAAucACGgucaCGACGGUGUCGc- -3'
miRNA:   3'- aACUGG-ACUU--UGC----GCUGCCGCAGCuc -5'
12874 5' -54.6 NC_003387.1 + 42429 0.66 0.721418
Target:  5'- cUGGCCUGcgcgcuGAGCGCccgaGGUGUCGAa -3'
miRNA:   3'- aACUGGAC------UUUGCGcug-CCGCAGCUc -5'
12874 5' -54.6 NC_003387.1 + 27528 0.66 0.710619
Target:  5'- aUGAUgcgCUGccGCgGCGGCGGCGcCGGGg -3'
miRNA:   3'- aACUG---GACuuUG-CGCUGCCGCaGCUC- -5'
12874 5' -54.6 NC_003387.1 + 13135 0.66 0.710619
Target:  5'- -cGGCCUcgcuggugcGcAGCGCGAacaGGCcGUCGAGg -3'
miRNA:   3'- aaCUGGA---------CuUUGCGCUg--CCG-CAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 12697 0.67 0.699741
Target:  5'- --cGCC---GACGCGcuCGGCGUCGAGu -3'
miRNA:   3'- aacUGGacuUUGCGCu-GCCGCAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 4555 0.67 0.688796
Target:  5'- -gGGCCUGcgccuGCGCGACcGCG-CGGGc -3'
miRNA:   3'- aaCUGGACuu---UGCGCUGcCGCaGCUC- -5'
12874 5' -54.6 NC_003387.1 + 28205 0.67 0.67559
Target:  5'- -cGACCUGcAGCucggcaagcgcagccGCGACGGCucgaccgagcagaucGUCGAGc -3'
miRNA:   3'- aaCUGGACuUUG---------------CGCUGCCG---------------CAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 38152 0.67 0.644573
Target:  5'- cUUGGCgUaGAACGgccaGGCGGCGUCGAc -3'
miRNA:   3'- -AACUGgAcUUUGCg---CUGCCGCAGCUc -5'
12874 5' -54.6 NC_003387.1 + 22013 0.67 0.644573
Target:  5'- -aGGCCgu-GACGCuagagcGCGGCGUCGAc -3'
miRNA:   3'- aaCUGGacuUUGCGc-----UGCCGCAGCUc -5'
12874 5' -54.6 NC_003387.1 + 6655 0.67 0.644573
Target:  5'- -cGGCgcaUGGGACGCcgacGCGGCGaUCGAGg -3'
miRNA:   3'- aaCUGg--ACUUUGCGc---UGCCGC-AGCUC- -5'
12874 5' -54.6 NC_003387.1 + 32051 0.67 0.644573
Target:  5'- -cGAgCUGAuguaGuCGACGGUGUCGAa -3'
miRNA:   3'- aaCUgGACUuug-C-GCUGCCGCAGCUc -5'
12874 5' -54.6 NC_003387.1 + 12466 0.67 0.644573
Target:  5'- -cGGCCUGGc-CGCGGgccUGGCGUcCGAGc -3'
miRNA:   3'- aaCUGGACUuuGCGCU---GCCGCA-GCUC- -5'
12874 5' -54.6 NC_003387.1 + 20148 0.68 0.633461
Target:  5'- -gGAUgaGcAGCGCGAacccgagGGCGUCGAGg -3'
miRNA:   3'- aaCUGgaCuUUGCGCUg------CCGCAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.