miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12874 5' -54.6 NC_003387.1 + 51 0.69 0.567106
Target:  5'- cUGACCUGcacAAACGCGcucgauCGGCGccgCGGGc -3'
miRNA:   3'- aACUGGAC---UUUGCGCu-----GCCGCa--GCUC- -5'
12874 5' -54.6 NC_003387.1 + 551 0.71 0.430854
Target:  5'- -cGAUCUGGcugcccuGACGCGGCGGCuGUUGGa -3'
miRNA:   3'- aaCUGGACU-------UUGCGCUGCCG-CAGCUc -5'
12874 5' -54.6 NC_003387.1 + 1633 0.69 0.578081
Target:  5'- -cGugCUGGcugaugGACGaCGACGGCcgccacGUCGAGg -3'
miRNA:   3'- aaCugGACU------UUGC-GCUGCCG------CAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 1982 0.95 0.010745
Target:  5'- cUUGACCUGAAACGC-ACGGCGUCGAGg -3'
miRNA:   3'- -AACUGGACUUUGCGcUGCCGCAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 2315 0.68 0.621238
Target:  5'- -cGAUCUGccgcccGACGUacagcucGGCGGUGUCGAGg -3'
miRNA:   3'- aaCUGGACu-----UUGCG-------CUGCCGCAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 3455 0.71 0.451481
Target:  5'- -cGACCUucacgcggucGAuGCGCGucacccCGGCGUCGAGc -3'
miRNA:   3'- aaCUGGA----------CUuUGCGCu-----GCCGCAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 4555 0.67 0.688796
Target:  5'- -gGGCCUGcgccuGCGCGACcGCG-CGGGc -3'
miRNA:   3'- aaCUGGACuu---UGCGCUGcCGCaGCUC- -5'
12874 5' -54.6 NC_003387.1 + 6655 0.67 0.644573
Target:  5'- -cGGCgcaUGGGACGCcgacGCGGCGaUCGAGg -3'
miRNA:   3'- aaCUGg--ACUUUGCGc---UGCCGC-AGCUC- -5'
12874 5' -54.6 NC_003387.1 + 7596 0.69 0.531311
Target:  5'- --cGCCUcGAAAUGCGucaccucguacaccGCGGCGUCGAc -3'
miRNA:   3'- aacUGGA-CUUUGCGC--------------UGCCGCAGCUc -5'
12874 5' -54.6 NC_003387.1 + 7626 0.66 0.757389
Target:  5'- gUGACCgaugcgcgGggGCGCaaguucaaggugcacGGCGaCGUCGAGg -3'
miRNA:   3'- aACUGGa-------CuuUGCG---------------CUGCcGCAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 9693 0.72 0.403299
Target:  5'- -aGGCgUGggGcCGUGACGGCGggcugaUCGAGg -3'
miRNA:   3'- aaCUGgACuuU-GCGCUGCCGC------AGCUC- -5'
12874 5' -54.6 NC_003387.1 + 10034 0.66 0.742734
Target:  5'- -cGAgCcGAAGCGCGccgagggcGCGGUGUCGGc -3'
miRNA:   3'- aaCUgGaCUUUGCGC--------UGCCGCAGCUc -5'
12874 5' -54.6 NC_003387.1 + 12466 0.67 0.644573
Target:  5'- -cGGCCUGGc-CGCGGgccUGGCGUcCGAGc -3'
miRNA:   3'- aaCUGGACUuuGCGCU---GCCGCA-GCUC- -5'
12874 5' -54.6 NC_003387.1 + 12697 0.67 0.699741
Target:  5'- --cGCC---GACGCGcuCGGCGUCGAGu -3'
miRNA:   3'- aacUGGacuUUGCGCu-GCCGCAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 13135 0.66 0.710619
Target:  5'- -cGGCCUcgcuggugcGcAGCGCGAacaGGCcGUCGAGg -3'
miRNA:   3'- aaCUGGA---------CuUUGCGCUg--CCG-CAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 13461 0.7 0.513189
Target:  5'- -gGGCaaGGGcCGCGACGGCGagGAGg -3'
miRNA:   3'- aaCUGgaCUUuGCGCUGCCGCagCUC- -5'
12874 5' -54.6 NC_003387.1 + 13886 0.7 0.471619
Target:  5'- aUGcCUUGAGcUGCGGCGGCucGUCGAGc -3'
miRNA:   3'- aACuGGACUUuGCGCUGCCG--CAGCUC- -5'
12874 5' -54.6 NC_003387.1 + 14177 0.69 0.534534
Target:  5'- -gGGCCgcGGGCGUGAgGGCGUCGuGa -3'
miRNA:   3'- aaCUGGacUUUGCGCUgCCGCAGCuC- -5'
12874 5' -54.6 NC_003387.1 + 15012 0.7 0.481857
Target:  5'- -cGGCUUGucGCGCGGguCGGCGUCGu- -3'
miRNA:   3'- aaCUGGACuuUGCGCU--GCCGCAGCuc -5'
12874 5' -54.6 NC_003387.1 + 15979 0.72 0.403299
Target:  5'- gUGACgCccAGGCGCucgcaGACGGCGUCGAGg -3'
miRNA:   3'- aACUG-GacUUUGCG-----CUGCCGCAGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.