miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12875 3' -59.1 NC_003387.1 + 35860 0.65 0.572427
Target:  5'- -gCCUgGGCGUgCGGCGCCaucuccucgcgCGGCGUg -3'
miRNA:   3'- cgGGAgCUGCA-GCUGCGGga---------GCUGCA- -5'
12875 3' -59.1 NC_003387.1 + 33311 0.66 0.564087
Target:  5'- gGCCCUUGGCaUCaAgGCCCgcaCGACGc -3'
miRNA:   3'- -CGGGAGCUGcAGcUgCGGGa--GCUGCa -5'
12875 3' -59.1 NC_003387.1 + 26693 0.66 0.564087
Target:  5'- aGCUCgCGcugcuCGUCGACGCCgUCGuGCGc -3'
miRNA:   3'- -CGGGaGCu----GCAGCUGCGGgAGC-UGCa -5'
12875 3' -59.1 NC_003387.1 + 4395 0.66 0.564087
Target:  5'- cGCCgUCGAcuacuggcagaaCGUCGACGCCgagCUgGGCa- -3'
miRNA:   3'- -CGGgAGCU------------GCAGCUGCGG---GAgCUGca -5'
12875 3' -59.1 NC_003387.1 + 52711 0.66 0.564087
Target:  5'- uGCCCcgCGaACGaucgCGGCGcCCCUCG-CGg -3'
miRNA:   3'- -CGGGa-GC-UGCa---GCUGC-GGGAGCuGCa -5'
12875 3' -59.1 NC_003387.1 + 39473 0.66 0.564087
Target:  5'- uGCCCUUGGugcgcagaucgcUGUCGGCcUgCUCGGCGUc -3'
miRNA:   3'- -CGGGAGCU------------GCAGCUGcGgGAGCUGCA- -5'
12875 3' -59.1 NC_003387.1 + 3216 0.66 0.564087
Target:  5'- aGCCCcauugCGAcaCGUCGACGCCg--GGCGg -3'
miRNA:   3'- -CGGGa----GCU--GCAGCUGCGGgagCUGCa -5'
12875 3' -59.1 NC_003387.1 + 43225 0.66 0.564087
Target:  5'- uGCCgUCGGgguacuCGUUGACGCCguaCUCGGgGUc -3'
miRNA:   3'- -CGGgAGCU------GCAGCUGCGG---GAGCUgCA- -5'
12875 3' -59.1 NC_003387.1 + 27932 0.66 0.564087
Target:  5'- gGCgCCUCGGggggggcucgGUCGGgGCgCUCGGCGUg -3'
miRNA:   3'- -CG-GGAGCUg---------CAGCUgCGgGAGCUGCA- -5'
12875 3' -59.1 NC_003387.1 + 44025 0.66 0.564087
Target:  5'- gGCUCgUCGACGUCGGuCGgCagCGGCGUg -3'
miRNA:   3'- -CGGG-AGCUGCAGCU-GCgGgaGCUGCA- -5'
12875 3' -59.1 NC_003387.1 + 35101 0.66 0.563047
Target:  5'- cGCCUucaacgguUCGAgGUCGGCGgCCUgcucaagCGGCGg -3'
miRNA:   3'- -CGGG--------AGCUgCAGCUGCgGGA-------GCUGCa -5'
12875 3' -59.1 NC_003387.1 + 49400 0.66 0.557853
Target:  5'- gGgCCUCGGUGucacgccacagcaccUCGGCGCCCgagUCGGCGg -3'
miRNA:   3'- -CgGGAGCUGC---------------AGCUGCGGG---AGCUGCa -5'
12875 3' -59.1 NC_003387.1 + 22970 0.66 0.553708
Target:  5'- cGCCCcggucaUCGuguCGggCGGCGCCgaCGACGg -3'
miRNA:   3'- -CGGG------AGCu--GCa-GCUGCGGgaGCUGCa -5'
12875 3' -59.1 NC_003387.1 + 46864 0.66 0.553708
Target:  5'- cGCaCCagGACGguugCGGCGCCCccaccugCGGCGc -3'
miRNA:   3'- -CG-GGagCUGCa---GCUGCGGGa------GCUGCa -5'
12875 3' -59.1 NC_003387.1 + 38332 0.66 0.553708
Target:  5'- aGCCguacagCGAcaagguCGUCGACgagGCCCUCGACa- -3'
miRNA:   3'- -CGGga----GCU------GCAGCUG---CGGGAGCUGca -5'
12875 3' -59.1 NC_003387.1 + 9035 0.66 0.552673
Target:  5'- cGCCgUCGGCGauccacgccaggaUCGcguCGCCCuccUCGGCGa -3'
miRNA:   3'- -CGGgAGCUGC-------------AGCu--GCGGG---AGCUGCa -5'
12875 3' -59.1 NC_003387.1 + 29358 0.66 0.549573
Target:  5'- aUCCUCGGCGaccugaccgucagCGGCGCCggUGACGa -3'
miRNA:   3'- cGGGAGCUGCa------------GCUGCGGgaGCUGCa -5'
12875 3' -59.1 NC_003387.1 + 15991 0.66 0.543387
Target:  5'- cGCUCgcagaCGGCGUCGAgGCCgggcagCUCGACc- -3'
miRNA:   3'- -CGGGa----GCUGCAGCUgCGG------GAGCUGca -5'
12875 3' -59.1 NC_003387.1 + 34141 0.66 0.543387
Target:  5'- cGCgaaCUCGACGagcaccagggCGuCGCCCUCGGCc- -3'
miRNA:   3'- -CGg--GAGCUGCa---------GCuGCGGGAGCUGca -5'
12875 3' -59.1 NC_003387.1 + 23536 0.66 0.543387
Target:  5'- -gCCUCGGgccaUGUCGAuacCGUCCUCGAuCGUc -3'
miRNA:   3'- cgGGAGCU----GCAGCU---GCGGGAGCU-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.