miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12875 5' -54 NC_003387.1 + 475 0.66 0.785548
Target:  5'- gCGACCgGcgCGAGCugcucGUCgcgaUGCGCgcccGCg -3'
miRNA:   3'- -GCUGGgUuaGCUCG-----CAGa---ACGCGa---CG- -5'
12875 5' -54 NC_003387.1 + 993 0.72 0.433652
Target:  5'- aGGCgCCGAcCGGG-GUCggaUGCGCUGCg -3'
miRNA:   3'- gCUG-GGUUaGCUCgCAGa--ACGCGACG- -5'
12875 5' -54 NC_003387.1 + 1244 0.69 0.613198
Target:  5'- -uGCCCGGUCuGGCGUUcgcggugucggUUGCGgUGCg -3'
miRNA:   3'- gcUGGGUUAGcUCGCAG-----------AACGCgACG- -5'
12875 5' -54 NC_003387.1 + 1863 1.13 0.00072
Target:  5'- gCGACCCAAUCGAGCGUCUUGCGCUGCa -3'
miRNA:   3'- -GCUGGGUUAGCUCGCAGAACGCGACG- -5'
12875 5' -54 NC_003387.1 + 2054 0.69 0.602116
Target:  5'- cCGAUCUggUCGAGaaugGUC-UGCGCgacGCg -3'
miRNA:   3'- -GCUGGGuuAGCUCg---CAGaACGCGa--CG- -5'
12875 5' -54 NC_003387.1 + 3287 0.68 0.634291
Target:  5'- aCGAcCCCGAcacggccgccgacUCGGGCGcCgagGUGCUGUg -3'
miRNA:   3'- -GCU-GGGUU-------------AGCUCGCaGaa-CGCGACG- -5'
12875 5' -54 NC_003387.1 + 4216 0.69 0.612089
Target:  5'- uCGGCCCAggacuggucgaaaAUCGuuGCGUCg-GCGCcGCa -3'
miRNA:   3'- -GCUGGGU-------------UAGCu-CGCAGaaCGCGaCG- -5'
12875 5' -54 NC_003387.1 + 4569 0.66 0.7755
Target:  5'- gCGACCgcg-CGGGCcUCgguggcGCGCUGCg -3'
miRNA:   3'- -GCUGGguuaGCUCGcAGaa----CGCGACG- -5'
12875 5' -54 NC_003387.1 + 6659 0.77 0.234553
Target:  5'- uCGACCCGcUCaAGCGcggUGCGCUGCa -3'
miRNA:   3'- -GCUGGGUuAGcUCGCagaACGCGACG- -5'
12875 5' -54 NC_003387.1 + 8106 0.67 0.690672
Target:  5'- -cGCCCGAgggCGAGCccagcUCguacGCGCUGCu -3'
miRNA:   3'- gcUGGGUUa--GCUCGc----AGaa--CGCGACG- -5'
12875 5' -54 NC_003387.1 + 9793 0.78 0.189371
Target:  5'- gCGACCauguuGUCGAGCGaCcgGCGCUGCa -3'
miRNA:   3'- -GCUGGgu---UAGCUCGCaGaaCGCGACG- -5'
12875 5' -54 NC_003387.1 + 11278 0.66 0.795433
Target:  5'- gCGACUCGAUCaaGGC-UCUUGCGaccgGCg -3'
miRNA:   3'- -GCUGGGUUAGc-UCGcAGAACGCga--CG- -5'
12875 5' -54 NC_003387.1 + 12009 0.66 0.795433
Target:  5'- gCGGCCUggUCGAcacgGCG-CaUGCGgUGUg -3'
miRNA:   3'- -GCUGGGuuAGCU----CGCaGaACGCgACG- -5'
12875 5' -54 NC_003387.1 + 12950 0.71 0.504571
Target:  5'- aGugCCAcGUCG-GCGUCUgGCgGCUGUa -3'
miRNA:   3'- gCugGGU-UAGCuCGCAGAaCG-CGACG- -5'
12875 5' -54 NC_003387.1 + 13320 0.66 0.7755
Target:  5'- uCGACCCAcUCGcGCGcCagGCGCacgaGCa -3'
miRNA:   3'- -GCUGGGUuAGCuCGCaGaaCGCGa---CG- -5'
12875 5' -54 NC_003387.1 + 13785 0.68 0.635402
Target:  5'- gGACCCGGUCGcGC----UGCGCUcGCa -3'
miRNA:   3'- gCUGGGUUAGCuCGcagaACGCGA-CG- -5'
12875 5' -54 NC_003387.1 + 14684 0.68 0.646504
Target:  5'- -cGCCCGAUCGGGgcgcCGUCgccgcgauccgUUGCGgUGCa -3'
miRNA:   3'- gcUGGGUUAGCUC----GCAG-----------AACGCgACG- -5'
12875 5' -54 NC_003387.1 + 14910 0.75 0.271326
Target:  5'- uCGGCCCGAUCGcGCG-CUgcugcgaccgcggGUGCUGCg -3'
miRNA:   3'- -GCUGGGUUAGCuCGCaGAa------------CGCGACG- -5'
12875 5' -54 NC_003387.1 + 15606 0.72 0.414468
Target:  5'- aCGGCCCGgccgacGUCGAGCacGUCgaggGCGCgcacgGCg -3'
miRNA:   3'- -GCUGGGU------UAGCUCG--CAGaa--CGCGa----CG- -5'
12875 5' -54 NC_003387.1 + 17468 0.66 0.754964
Target:  5'- gCGGCgCCAGUUGucgucGGCGUaCUUGCGg-GCg -3'
miRNA:   3'- -GCUG-GGUUAGC-----UCGCA-GAACGCgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.