miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12876 3' -59.1 NC_003387.1 + 23418 0.68 0.370439
Target:  5'- aGCGCGGCGC---CUGCGUcaUUGCGg- -3'
miRNA:   3'- aCGCGCUGCGcgaGACGCG--AACGCac -5'
12876 3' -59.1 NC_003387.1 + 23408 0.68 0.361909
Target:  5'- aGCGCGGCcugGCGCUC-GUGCccGCGg- -3'
miRNA:   3'- aCGCGCUG---CGCGAGaCGCGaaCGCac -5'
12876 3' -59.1 NC_003387.1 + 26206 0.68 0.361909
Target:  5'- cGCGCGACGaCGUgcgGCGCUUcauucacaGCGUc -3'
miRNA:   3'- aCGCGCUGC-GCGagaCGCGAA--------CGCAc -5'
12876 3' -59.1 NC_003387.1 + 481 0.68 0.361064
Target:  5'- gGCGCGA-GCuGCUCgucgcgaUGCGCgcccGCGUGg -3'
miRNA:   3'- aCGCGCUgCG-CGAG-------ACGCGaa--CGCAC- -5'
12876 3' -59.1 NC_003387.1 + 28903 0.68 0.353517
Target:  5'- gGCGCGGCGCcCUCacguaucugcUGCGCggcgGCGa- -3'
miRNA:   3'- aCGCGCUGCGcGAG----------ACGCGaa--CGCac -5'
12876 3' -59.1 NC_003387.1 + 18749 0.68 0.345264
Target:  5'- aGCGCaugcacAUGCGCUUUGCGUc-GCGUGu -3'
miRNA:   3'- aCGCGc-----UGCGCGAGACGCGaaCGCAC- -5'
12876 3' -59.1 NC_003387.1 + 19641 0.69 0.329176
Target:  5'- cGgGCGACGCgguuacGCUCgcgGCGCUUGgCGc- -3'
miRNA:   3'- aCgCGCUGCG------CGAGa--CGCGAAC-GCac -5'
12876 3' -59.1 NC_003387.1 + 37285 0.69 0.321342
Target:  5'- gGCGCcuGGCGCGCUCgucgGCGCgguCGUc -3'
miRNA:   3'- aCGCG--CUGCGCGAGa---CGCGaacGCAc -5'
12876 3' -59.1 NC_003387.1 + 895 0.69 0.321342
Target:  5'- cUGCuCGGCGCGCUCguguucGCGCUgUGCa-- -3'
miRNA:   3'- -ACGcGCUGCGCGAGa-----CGCGA-ACGcac -5'
12876 3' -59.1 NC_003387.1 + 20658 0.69 0.313648
Target:  5'- aGCGCGAacggGCGCUCggcgGCGacagaCUUGCGa- -3'
miRNA:   3'- aCGCGCUg---CGCGAGa---CGC-----GAACGCac -5'
12876 3' -59.1 NC_003387.1 + 18525 0.69 0.29868
Target:  5'- cGCGaCGugGCGCUgUG-GCUUGUGc- -3'
miRNA:   3'- aCGC-GCugCGCGAgACgCGAACGCac -5'
12876 3' -59.1 NC_003387.1 + 24834 0.7 0.291407
Target:  5'- cGCGUG-UGCGCugUCUGCGgCcgggUGCGUGg -3'
miRNA:   3'- aCGCGCuGCGCG--AGACGC-Ga---ACGCAC- -5'
12876 3' -59.1 NC_003387.1 + 22090 0.7 0.284272
Target:  5'- gGCGCucuCGCGCU-UGUGCUUGCGc- -3'
miRNA:   3'- aCGCGcu-GCGCGAgACGCGAACGCac -5'
12876 3' -59.1 NC_003387.1 + 20179 0.7 0.280059
Target:  5'- gGCGCGGuugaUGCGCUgCUGCGCcucgcacggccggGCGUGc -3'
miRNA:   3'- aCGCGCU----GCGCGA-GACGCGaa-----------CGCAC- -5'
12876 3' -59.1 NC_003387.1 + 44460 0.7 0.263699
Target:  5'- cUGCGCGAgGCGCUgcaCGCccGCGUGa -3'
miRNA:   3'- -ACGCGCUgCGCGAgacGCGaaCGCAC- -5'
12876 3' -59.1 NC_003387.1 + 350 0.71 0.244351
Target:  5'- cGCGUG-CGCGCggucgaUCUGCGCgaGCGg- -3'
miRNA:   3'- aCGCGCuGCGCG------AGACGCGaaCGCac -5'
12876 3' -59.1 NC_003387.1 + 1131 0.71 0.232118
Target:  5'- gGCGCacGGUGUGCUCgGCGCcUGCGUGc -3'
miRNA:   3'- aCGCG--CUGCGCGAGaCGCGaACGCAC- -5'
12876 3' -59.1 NC_003387.1 + 20051 0.72 0.18826
Target:  5'- gUGCGCGGCGagguucaGCUCgGCGU--GCGUGa -3'
miRNA:   3'- -ACGCGCUGCg------CGAGaCGCGaaCGCAC- -5'
12876 3' -59.1 NC_003387.1 + 48933 0.74 0.151861
Target:  5'- gUGCGCGuuCGUGCUCagcuucgagGCGC-UGCGUGa -3'
miRNA:   3'- -ACGCGCu-GCGCGAGa--------CGCGaACGCAC- -5'
12876 3' -59.1 NC_003387.1 + 3558 0.75 0.11864
Target:  5'- cUGCGCGAC-CGC-CUGCGCgcugGUGUGc -3'
miRNA:   3'- -ACGCGCUGcGCGaGACGCGaa--CGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.