miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12876 5' -52.8 NC_003387.1 + 23727 0.66 0.838615
Target:  5'- gGCGCAGCGcauugcugcagcuuAGCGGGuGCGCUCgaguuuuugCCGGc -3'
miRNA:   3'- aCGUGUCGU--------------UUGCUUuUGCGGG---------GGCC- -5'
12876 5' -52.8 NC_003387.1 + 15385 0.66 0.832282
Target:  5'- aGCGCAGCccgcGGCGggGGCucGUCCaCGGc -3'
miRNA:   3'- aCGUGUCGu---UUGCuuUUG--CGGGgGCC- -5'
12876 5' -52.8 NC_003387.1 + 51023 0.66 0.832282
Target:  5'- aUGCAC-GCAAGCGcAGAGCGCgUCgCGc -3'
miRNA:   3'- -ACGUGuCGUUUGC-UUUUGCGgGG-GCc -5'
12876 5' -52.8 NC_003387.1 + 23408 0.66 0.832282
Target:  5'- aGCGCGGCcuGGCGcucgUGCCCgCGGu -3'
miRNA:   3'- aCGUGUCGu-UUGCuuuuGCGGGgGCC- -5'
12876 5' -52.8 NC_003387.1 + 3970 0.66 0.832282
Target:  5'- aGCACcGCGuGCGu-GACGUUCCCaGGa -3'
miRNA:   3'- aCGUGuCGUuUGCuuUUGCGGGGG-CC- -5'
12876 5' -52.8 NC_003387.1 + 36860 0.66 0.823049
Target:  5'- cGCccucaaGCAGCAGACGAuugugcuCGCCgaCGGg -3'
miRNA:   3'- aCG------UGUCGUUUGCUuuu----GCGGggGCC- -5'
12876 5' -52.8 NC_003387.1 + 52634 0.66 0.823049
Target:  5'- aUGCAgGGgAGuCGAgccagcAAACGCCCgCGGc -3'
miRNA:   3'- -ACGUgUCgUUuGCU------UUUGCGGGgGCC- -5'
12876 5' -52.8 NC_003387.1 + 22274 0.66 0.823049
Target:  5'- gUGgACuGGCAGACcAGGGCGCCaacaaaCCCGGc -3'
miRNA:   3'- -ACgUG-UCGUUUGcUUUUGCGG------GGGCC- -5'
12876 5' -52.8 NC_003387.1 + 3150 0.66 0.823049
Target:  5'- cGCcCGGC-AGCGG--GCGCaCCUCGGc -3'
miRNA:   3'- aCGuGUCGuUUGCUuuUGCG-GGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 2909 0.66 0.823049
Target:  5'- gGCGCGGCAGgccGCGGGcGAgGCUCUCGu -3'
miRNA:   3'- aCGUGUCGUU---UGCUU-UUgCGGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 51821 0.66 0.813608
Target:  5'- aUGCACAGC--GCGAacacGAGCGCgCCgagcaGGu -3'
miRNA:   3'- -ACGUGUCGuuUGCU----UUUGCGgGGg----CC- -5'
12876 5' -52.8 NC_003387.1 + 31725 0.66 0.813608
Target:  5'- aGCGCAggucGCAGGCGAguuagGggUGUCCCUGc -3'
miRNA:   3'- aCGUGU----CGUUUGCU-----UuuGCGGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 1333 0.66 0.813608
Target:  5'- gGUACGucgagauuuccGCcGACGAGGACGCcgaCCCCGa -3'
miRNA:   3'- aCGUGU-----------CGuUUGCUUUUGCG---GGGGCc -5'
12876 5' -52.8 NC_003387.1 + 32733 0.66 0.813608
Target:  5'- gGCGCcGCG---GAGAACGgCCCCGa -3'
miRNA:   3'- aCGUGuCGUuugCUUUUGCgGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 43924 0.66 0.813608
Target:  5'- gGCGCgAGCuGAGCGGGAAucagguCGCCCgCCGc -3'
miRNA:   3'- aCGUG-UCG-UUUGCUUUU------GCGGG-GGCc -5'
12876 5' -52.8 NC_003387.1 + 7575 0.66 0.813608
Target:  5'- -aCugAGUAcACGAugGCGaCCCCCGa -3'
miRNA:   3'- acGugUCGUuUGCUuuUGC-GGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 28395 0.66 0.812653
Target:  5'- cUGaCGCAGgAAACGAu--CGCCgagcagaCCCGGc -3'
miRNA:   3'- -AC-GUGUCgUUUGCUuuuGCGG-------GGGCC- -5'
12876 5' -52.8 NC_003387.1 + 46791 0.67 0.807848
Target:  5'- cGCGCGG-AAACcuguugucaGCCCCCGGc -3'
miRNA:   3'- aCGUGUCgUUUGcuuuug---CGGGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 41297 0.67 0.803969
Target:  5'- gGCACgAGCAccGACGAca--GCaCCUCGGg -3'
miRNA:   3'- aCGUG-UCGU--UUGCUuuugCG-GGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 11635 0.67 0.803969
Target:  5'- aGCucGCGGCucACGAu--CGCCCCuCGa -3'
miRNA:   3'- aCG--UGUCGuuUGCUuuuGCGGGG-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.