miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12877 5' -63.9 NC_003387.1 + 8287 0.66 0.324539
Target:  5'- cGCCucguGCGCGUcgGcGGGCAGCaUCGCg -3'
miRNA:   3'- cCGGcc--CGCGCA--CaCCCGUCGgAGCG- -5'
12877 5' -63.9 NC_003387.1 + 35642 0.66 0.324539
Target:  5'- cGGCCGGGCGgGcacuGGCcGaCCUCGa -3'
miRNA:   3'- -CCGGCCCGCgCacacCCGuC-GGAGCg -5'
12877 5' -63.9 NC_003387.1 + 43731 0.66 0.324539
Target:  5'- cGGCaugCGGGagcccgcgaGCGUGUuGGCGGCUaccgCGCa -3'
miRNA:   3'- -CCG---GCCCg--------CGCACAcCCGUCGGa---GCG- -5'
12877 5' -63.9 NC_003387.1 + 50988 0.66 0.324539
Target:  5'- cGGCCGGGgGCGUuuucguuugcuGUGcacGCGGCaugcaCGCa -3'
miRNA:   3'- -CCGGCCCgCGCA-----------CACc--CGUCGga---GCG- -5'
12877 5' -63.9 NC_003387.1 + 19870 0.66 0.32379
Target:  5'- cGCUGGGCGCccugcaagacaccGUGcUGGGCcugAGCCaggacgUGCa -3'
miRNA:   3'- cCGGCCCGCG-------------CAC-ACCCG---UCGGa-----GCG- -5'
12877 5' -63.9 NC_003387.1 + 6938 0.66 0.317112
Target:  5'- cGGUUaucgGGGUGCGUGaGGGCAcccugcuggccGCcCUCGUc -3'
miRNA:   3'- -CCGG----CCCGCGCACaCCCGU-----------CG-GAGCG- -5'
12877 5' -63.9 NC_003387.1 + 46131 0.66 0.317112
Target:  5'- uGGCuCGGGCGUGagGUGccGCGGUCgUCGUu -3'
miRNA:   3'- -CCG-GCCCGCGCa-CACc-CGUCGG-AGCG- -5'
12877 5' -63.9 NC_003387.1 + 23818 0.66 0.317112
Target:  5'- gGGCuCGGGCG-GUGgcccGGC-GCC-CGCg -3'
miRNA:   3'- -CCG-GCCCGCgCACac--CCGuCGGaGCG- -5'
12877 5' -63.9 NC_003387.1 + 48424 0.66 0.317112
Target:  5'- uGCCGGGuCGCG-GUGcGCugcucGCC-CGCg -3'
miRNA:   3'- cCGGCCC-GCGCaCACcCGu----CGGaGCG- -5'
12877 5' -63.9 NC_003387.1 + 35680 0.66 0.317112
Target:  5'- uGGCugagCGGGCaCGUGUGGG-GGCCguacgGCg -3'
miRNA:   3'- -CCG----GCCCGcGCACACCCgUCGGag---CG- -5'
12877 5' -63.9 NC_003387.1 + 29871 0.66 0.295603
Target:  5'- cGGCgaGGGCGCuuucGUGUugacGGGUcaacAGCC-CGCg -3'
miRNA:   3'- -CCGg-CCCGCG----CACA----CCCG----UCGGaGCG- -5'
12877 5' -63.9 NC_003387.1 + 13536 0.66 0.281904
Target:  5'- cGGCCuGGGCuCGcUGUucaagggccuGGGCAGCC-CGa -3'
miRNA:   3'- -CCGG-CCCGcGC-ACA----------CCCGUCGGaGCg -5'
12877 5' -63.9 NC_003387.1 + 27912 0.66 0.281904
Target:  5'- cGGCCuugaccGGCG-GcGUGGGC-GCCUCGg -3'
miRNA:   3'- -CCGGc-----CCGCgCaCACCCGuCGGAGCg -5'
12877 5' -63.9 NC_003387.1 + 9343 0.66 0.281904
Target:  5'- aGCCGGGCGcCGUGcaGGCgAGCUaucuccguuUCGUg -3'
miRNA:   3'- cCGGCCCGC-GCACacCCG-UCGG---------AGCG- -5'
12877 5' -63.9 NC_003387.1 + 22443 0.66 0.281904
Target:  5'- aGGCgCGGGcCGCGgc--GuuGGCCUCGCg -3'
miRNA:   3'- -CCG-GCCC-GCGCacacCcgUCGGAGCG- -5'
12877 5' -63.9 NC_003387.1 + 5703 0.66 0.281233
Target:  5'- cGGCCGGGcCGCcaaUGaagucgagcaccaGGCGGCC-CGCg -3'
miRNA:   3'- -CCGGCCC-GCGcacAC-------------CCGUCGGaGCG- -5'
12877 5' -63.9 NC_003387.1 + 49058 0.67 0.275246
Target:  5'- cGCUGcuGGCGCucaccGGGCAGgCUCGCg -3'
miRNA:   3'- cCGGC--CCGCGcaca-CCCGUCgGAGCG- -5'
12877 5' -63.9 NC_003387.1 + 29409 0.67 0.275246
Target:  5'- cGCCGGGCGCaGgagGaGGccgccgcaGCGGCC-CGCg -3'
miRNA:   3'- cCGGCCCGCG-Ca--CaCC--------CGUCGGaGCG- -5'
12877 5' -63.9 NC_003387.1 + 49571 0.67 0.275246
Target:  5'- cGCCGaGGUGCGcccgcUGccGGGCgguGGCCUgGCa -3'
miRNA:   3'- cCGGC-CCGCGC-----ACa-CCCG---UCGGAgCG- -5'
12877 5' -63.9 NC_003387.1 + 988 0.67 0.275246
Target:  5'- cGCCGaGGCGCcgaccgGGGUcggaugcgcugcGGCCUUGCg -3'
miRNA:   3'- cCGGC-CCGCGcaca--CCCG------------UCGGAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.