miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12878 3' -62.6 NC_003387.1 + 19141 0.66 0.367681
Target:  5'- cGACCGG-GCGGUggcucgucgacgcugUCGAGggcGCGGC-CCGc -3'
miRNA:   3'- -CUGGCCgCGUCA---------------AGCUC---CGCCGcGGC- -5'
12878 3' -62.6 NC_003387.1 + 25563 0.66 0.364381
Target:  5'- ---aGGgGCAcacGUUCcccGGCGGCGCCGa -3'
miRNA:   3'- cuggCCgCGU---CAAGcu-CCGCCGCGGC- -5'
12878 3' -62.6 NC_003387.1 + 13135 0.66 0.364381
Target:  5'- --gCGGCGCAGcUUGAGGa--CGCCGa -3'
miRNA:   3'- cugGCCGCGUCaAGCUCCgccGCGGC- -5'
12878 3' -62.6 NC_003387.1 + 1706 0.66 0.364381
Target:  5'- cGACUGGaucgcugaGCGGgcCG-GGCGGCGCa- -3'
miRNA:   3'- -CUGGCCg-------CGUCaaGCuCCGCCGCGgc -5'
12878 3' -62.6 NC_003387.1 + 43463 0.66 0.364381
Target:  5'- uGACCGGCgGCGacGUccugUCGGGGCGGUucauGCgGc -3'
miRNA:   3'- -CUGGCCG-CGU--CA----AGCUCCGCCG----CGgC- -5'
12878 3' -62.6 NC_003387.1 + 33773 0.66 0.364381
Target:  5'- cGCCGcGaGCGGUUUGGcccGGCuGGUGCCGa -3'
miRNA:   3'- cUGGC-CgCGUCAAGCU---CCG-CCGCGGC- -5'
12878 3' -62.6 NC_003387.1 + 6433 0.66 0.356221
Target:  5'- gGGCCaGGcCGUcgAGgUCGuGGGCGGCGUCGc -3'
miRNA:   3'- -CUGG-CC-GCG--UCaAGC-UCCGCCGCGGC- -5'
12878 3' -62.6 NC_003387.1 + 41751 0.66 0.356221
Target:  5'- cGGCUGGcCGCGGUguggugcgaccUCGAcgucaagccgGGCGcGUGCCGc -3'
miRNA:   3'- -CUGGCC-GCGUCA-----------AGCU----------CCGC-CGCGGC- -5'
12878 3' -62.6 NC_003387.1 + 21570 0.66 0.356221
Target:  5'- aGACCGuggcccaggcGCGCGGcaucagCGAGGCcgacgcGGCGCUGc -3'
miRNA:   3'- -CUGGC----------CGCGUCaa----GCUCCG------CCGCGGC- -5'
12878 3' -62.6 NC_003387.1 + 29194 0.66 0.356221
Target:  5'- cGugCGG-GUAGUugaacgauUCGGGGuCGGCGCgGu -3'
miRNA:   3'- -CugGCCgCGUCA--------AGCUCC-GCCGCGgC- -5'
12878 3' -62.6 NC_003387.1 + 23686 0.66 0.356221
Target:  5'- -cCCGGCGUgagcCGAGG-GGCGCUGu -3'
miRNA:   3'- cuGGCCGCGucaaGCUCCgCCGCGGC- -5'
12878 3' -62.6 NC_003387.1 + 457 0.66 0.356221
Target:  5'- aACCGcGCGC---UCGGGcGCGGCGuuGc -3'
miRNA:   3'- cUGGC-CGCGucaAGCUC-CGCCGCggC- -5'
12878 3' -62.6 NC_003387.1 + 1816 0.66 0.34819
Target:  5'- uGACCGGCGCGGccgauauggCGAagGGCuGCgGCCu -3'
miRNA:   3'- -CUGGCCGCGUCaa-------GCU--CCGcCG-CGGc -5'
12878 3' -62.6 NC_003387.1 + 32836 0.66 0.34819
Target:  5'- -cCCGcacCGCGGggCGGGGCGGUuccgcgucGCCGa -3'
miRNA:   3'- cuGGCc--GCGUCaaGCUCCGCCG--------CGGC- -5'
12878 3' -62.6 NC_003387.1 + 476 0.66 0.34029
Target:  5'- cGACCGGCGCgAGcugcUCGucGCGaugcGCGCCc -3'
miRNA:   3'- -CUGGCCGCG-UCa---AGCucCGC----CGCGGc -5'
12878 3' -62.6 NC_003387.1 + 44979 0.66 0.34029
Target:  5'- cGAUCGcCGCuGccgcCGAGGCGGUGCUGu -3'
miRNA:   3'- -CUGGCcGCGuCaa--GCUCCGCCGCGGC- -5'
12878 3' -62.6 NC_003387.1 + 12825 0.66 0.34029
Target:  5'- cGCCGGgGCAGUUguggUGAGGCa-CGCUGc -3'
miRNA:   3'- cUGGCCgCGUCAA----GCUCCGccGCGGC- -5'
12878 3' -62.6 NC_003387.1 + 30439 0.66 0.332519
Target:  5'- aGGCCgaGGCGguGgcCGAGcaCGGCGCCc -3'
miRNA:   3'- -CUGG--CCGCguCaaGCUCc-GCCGCGGc -5'
12878 3' -62.6 NC_003387.1 + 34106 0.66 0.332519
Target:  5'- -uUCGGCgGCAGaUC--GGCGGCGUCGa -3'
miRNA:   3'- cuGGCCG-CGUCaAGcuCCGCCGCGGC- -5'
12878 3' -62.6 NC_003387.1 + 21226 0.66 0.33175
Target:  5'- uGCgGGCGCAGggCGAuccggucGGCaugguGCGCCGc -3'
miRNA:   3'- cUGgCCGCGUCaaGCU-------CCGc----CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.