miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12878 5' -54.4 NC_003387.1 + 30740 0.66 0.783668
Target:  5'- gGCCGGgaUCACCGGgCGca-CCGuAGUUg -3'
miRNA:   3'- -CGGCC--AGUGGCCgGCuuaGGCuUUAG- -5'
12878 5' -54.4 NC_003387.1 + 10883 0.66 0.783668
Target:  5'- cGUCGGcCGCUGGCCGA--CCaGGAUg -3'
miRNA:   3'- -CGGCCaGUGGCCGGCUuaGGcUUUAg -5'
12878 5' -54.4 NC_003387.1 + 4513 0.66 0.783668
Target:  5'- uGCgGGUCACCucGGCCGccgccgCCGGu--- -3'
miRNA:   3'- -CGgCCAGUGG--CCGGCuua---GGCUuuag -5'
12878 5' -54.4 NC_003387.1 + 10536 0.66 0.773671
Target:  5'- gGCCGGgu-UCGGCCG--UCUGAcgcaGAUCg -3'
miRNA:   3'- -CGGCCaguGGCCGGCuuAGGCU----UUAG- -5'
12878 5' -54.4 NC_003387.1 + 7827 0.66 0.773671
Target:  5'- gGCCgaGGUCGcCCGGCgCGcAggCGGAAUCg -3'
miRNA:   3'- -CGG--CCAGU-GGCCG-GCuUagGCUUUAG- -5'
12878 5' -54.4 NC_003387.1 + 44728 0.66 0.773671
Target:  5'- uGCC--UCGcCCGGCCGGGgcgCCGAAGc- -3'
miRNA:   3'- -CGGccAGU-GGCCGGCUUa--GGCUUUag -5'
12878 5' -54.4 NC_003387.1 + 4966 0.66 0.773671
Target:  5'- aGCCGGUCA--GGCCGugcUCgcgcaGAGGUCg -3'
miRNA:   3'- -CGGCCAGUggCCGGCuu-AGg----CUUUAG- -5'
12878 5' -54.4 NC_003387.1 + 7512 0.66 0.773671
Target:  5'- -aCGaGUCugCGGCCGAGggugaaCGAGAg- -3'
miRNA:   3'- cgGC-CAGugGCCGGCUUag----GCUUUag -5'
12878 5' -54.4 NC_003387.1 + 38866 0.66 0.763527
Target:  5'- cGgCGGcUCGCCGGCCGuuagcuagacGcgCCGAAc-- -3'
miRNA:   3'- -CgGCC-AGUGGCCGGC----------UuaGGCUUuag -5'
12878 5' -54.4 NC_003387.1 + 30570 0.67 0.732331
Target:  5'- gGCCGGUacgCGCCGuGCCgcGAGUgCGGGuacGUCg -3'
miRNA:   3'- -CGGCCA---GUGGC-CGG--CUUAgGCUU---UAG- -5'
12878 5' -54.4 NC_003387.1 + 51403 0.67 0.721715
Target:  5'- gGCCGGUgACCGGCgagcgccugCGGcgCCGcc-UCg -3'
miRNA:   3'- -CGGCCAgUGGCCG---------GCUuaGGCuuuAG- -5'
12878 5' -54.4 NC_003387.1 + 15606 0.67 0.721715
Target:  5'- -aCGG-C-CCGGCCGAcgUCGAGcacGUCg -3'
miRNA:   3'- cgGCCaGuGGCCGGCUuaGGCUU---UAG- -5'
12878 5' -54.4 NC_003387.1 + 52262 0.67 0.711011
Target:  5'- cGCCGGUCGCCgucGGCCG---CCGc---- -3'
miRNA:   3'- -CGGCCAGUGG---CCGGCuuaGGCuuuag -5'
12878 5' -54.4 NC_003387.1 + 18623 0.67 0.711011
Target:  5'- cGCCGaUCugCcGCCGAAggCCGAGAa- -3'
miRNA:   3'- -CGGCcAGugGcCGGCUUa-GGCUUUag -5'
12878 5' -54.4 NC_003387.1 + 35430 0.67 0.711011
Target:  5'- uGgCGGauUCGCCGGCUGuuagcugUCGggGUCg -3'
miRNA:   3'- -CgGCC--AGUGGCCGGCuua----GGCuuUAG- -5'
12878 5' -54.4 NC_003387.1 + 28462 0.67 0.700228
Target:  5'- aGCUGG-CGgCGGCCc---CCGAGGUCa -3'
miRNA:   3'- -CGGCCaGUgGCCGGcuuaGGCUUUAG- -5'
12878 5' -54.4 NC_003387.1 + 19041 0.67 0.700228
Target:  5'- cCCGGcCGCCuGCCGAucAUcCCGguGUCg -3'
miRNA:   3'- cGGCCaGUGGcCGGCU--UA-GGCuuUAG- -5'
12878 5' -54.4 NC_003387.1 + 12303 0.67 0.700228
Target:  5'- gGCCGGgCACCGGCaCGAgcgacagcAUCCucGcgCg -3'
miRNA:   3'- -CGGCCaGUGGCCG-GCU--------UAGGcuUuaG- -5'
12878 5' -54.4 NC_003387.1 + 39239 0.67 0.689379
Target:  5'- aCCGG-CGCCGGgCGAGgccgUCGAGuUCg -3'
miRNA:   3'- cGGCCaGUGGCCgGCUUa---GGCUUuAG- -5'
12878 5' -54.4 NC_003387.1 + 30490 0.68 0.678475
Target:  5'- cGUCGG-CGCCGGUCGAGUggaCCGucggCa -3'
miRNA:   3'- -CGGCCaGUGGCCGGCUUA---GGCuuuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.