miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12879 3' -55.8 NC_003387.1 + 17177 0.66 0.634336
Target:  5'- uGCGCcGCcuGGGCgGCGACGGcgcGAAa -3'
miRNA:   3'- gUGCGuCGuuCCCGgCGUUGCU---CUUa -5'
12879 3' -55.8 NC_003387.1 + 29414 0.66 0.634336
Target:  5'- gGCGCAGgAGGaGGCCGCcgcAGCGGc--- -3'
miRNA:   3'- gUGCGUCgUUC-CCGGCG---UUGCUcuua -5'
12879 3' -55.8 NC_003387.1 + 33519 0.66 0.623135
Target:  5'- aACGcCAGCAAGGuGCCGCAcauuCGGc--- -3'
miRNA:   3'- gUGC-GUCGUUCC-CGGCGUu---GCUcuua -5'
12879 3' -55.8 NC_003387.1 + 52466 0.66 0.620896
Target:  5'- gGCGCAGCcAGGGCacugcacgcugaGCAuguCGGGGGc -3'
miRNA:   3'- gUGCGUCGuUCCCGg-----------CGUu--GCUCUUa -5'
12879 3' -55.8 NC_003387.1 + 35691 0.66 0.611942
Target:  5'- gCACGU-GUggGGGCCGUAcgGCGAcGAc- -3'
miRNA:   3'- -GUGCGuCGuuCCCGGCGU--UGCU-CUua -5'
12879 3' -55.8 NC_003387.1 + 50165 0.66 0.611942
Target:  5'- gGCGUacacGGCGAGGaucuGCCGCGGCGAc--- -3'
miRNA:   3'- gUGCG----UCGUUCC----CGGCGUUGCUcuua -5'
12879 3' -55.8 NC_003387.1 + 5686 0.66 0.600767
Target:  5'- uGCGCAGCAAGG-UgGCGGCGGu--- -3'
miRNA:   3'- gUGCGUCGUUCCcGgCGUUGCUcuua -5'
12879 3' -55.8 NC_003387.1 + 5104 0.66 0.600767
Target:  5'- cCAUGUgGGCGAGGuuCUGCGGCGAGAAc -3'
miRNA:   3'- -GUGCG-UCGUUCCc-GGCGUUGCUCUUa -5'
12879 3' -55.8 NC_003387.1 + 52525 0.67 0.58962
Target:  5'- aACGCGGCAAugucgcGGGCCGaguCGAGc-- -3'
miRNA:   3'- gUGCGUCGUU------CCCGGCguuGCUCuua -5'
12879 3' -55.8 NC_003387.1 + 48214 0.67 0.58962
Target:  5'- uCGCGCAGCAgccggucgagcGGGGCCuCcGCGGGc-- -3'
miRNA:   3'- -GUGCGUCGU-----------UCCCGGcGuUGCUCuua -5'
12879 3' -55.8 NC_003387.1 + 19953 0.67 0.57851
Target:  5'- gUACGCGGCGGGuGGuuGCGcauCGAGu-- -3'
miRNA:   3'- -GUGCGUCGUUC-CCggCGUu--GCUCuua -5'
12879 3' -55.8 NC_003387.1 + 22431 0.67 0.566342
Target:  5'- gCGCGUcgucccaGGCGcGGGCCGCGGCGuuGGc -3'
miRNA:   3'- -GUGCG-------UCGUuCCCGGCGUUGCucUUa -5'
12879 3' -55.8 NC_003387.1 + 15625 0.67 0.556436
Target:  5'- gCACGU--CGAGGGCgCGCAcgGCGAGGu- -3'
miRNA:   3'- -GUGCGucGUUCCCG-GCGU--UGCUCUua -5'
12879 3' -55.8 NC_003387.1 + 11276 0.67 0.556436
Target:  5'- aGgGCGGCGucAGGGCCGCGcCGGuGAc- -3'
miRNA:   3'- gUgCGUCGU--UCCCGGCGUuGCU-CUua -5'
12879 3' -55.8 NC_003387.1 + 44446 0.67 0.545489
Target:  5'- aCGCGCA-CGAGGcGCUGC-GCGAGGc- -3'
miRNA:   3'- -GUGCGUcGUUCC-CGGCGuUGCUCUua -5'
12879 3' -55.8 NC_003387.1 + 14818 0.67 0.545489
Target:  5'- cCACGCgGGCAGcGGGUCGCccuCGGGGu- -3'
miRNA:   3'- -GUGCG-UCGUU-CCCGGCGuu-GCUCUua -5'
12879 3' -55.8 NC_003387.1 + 37587 0.67 0.545489
Target:  5'- gUACGCGGCAAucGGGUCGCGcAC-AGggUc -3'
miRNA:   3'- -GUGCGUCGUU--CCCGGCGU-UGcUCuuA- -5'
12879 3' -55.8 NC_003387.1 + 5922 0.68 0.523812
Target:  5'- aACGCAGCGcGGGCCGU--CGAa--- -3'
miRNA:   3'- gUGCGUCGUuCCCGGCGuuGCUcuua -5'
12879 3' -55.8 NC_003387.1 + 19900 0.68 0.523812
Target:  5'- -cCGCGGUgcGGGCUGCGcUGAGAu- -3'
miRNA:   3'- guGCGUCGuuCCCGGCGUuGCUCUua -5'
12879 3' -55.8 NC_003387.1 + 10318 0.68 0.523812
Target:  5'- gACGCgGGCAAGGgaaucaGCCGCGGCGucGAUa -3'
miRNA:   3'- gUGCG-UCGUUCC------CGGCGUUGCucUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.