Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12879 | 5' | -54.6 | NC_003387.1 | + | 23436 | 0.66 | 0.719598 |
Target: 5'- ----cGCCGGggaaCAGGGCgUCGAUGc -3' miRNA: 3'- gauaaCGGUCaca-GUCCCGgAGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 18997 | 0.66 | 0.719598 |
Target: 5'- ----aGCUGGcGgcguGGGCCUCGACGa -3' miRNA: 3'- gauaaCGGUCaCagu-CCCGGAGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 50882 | 0.66 | 0.719598 |
Target: 5'- ----cGCCcuugAGaacGUCGGGGCgUCGACGu -3' miRNA: 3'- gauaaCGG----UCa--CAGUCCCGgAGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 31037 | 0.67 | 0.664839 |
Target: 5'- ----cGCCgAGgcgGcCAGGGCgUCGGCGa -3' miRNA: 3'- gauaaCGG-UCa--CaGUCCCGgAGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 27946 | 0.67 | 0.642638 |
Target: 5'- ----gGCUcG-GUCGGGGCgCUCGGCGu -3' miRNA: 3'- gauaaCGGuCaCAGUCCCG-GAGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 20023 | 0.67 | 0.642638 |
Target: 5'- ----aGCCcuGUGUCAuguGGGUgUCGACGa -3' miRNA: 3'- gauaaCGGu-CACAGU---CCCGgAGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 23853 | 0.68 | 0.631518 |
Target: 5'- ----cGCCGcaGUCGGGGCCguggacCGGCGa -3' miRNA: 3'- gauaaCGGUcaCAGUCCCGGa-----GCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 16585 | 0.68 | 0.631518 |
Target: 5'- ----cGCCuc-GUCGGGGCucaCUCGACGa -3' miRNA: 3'- gauaaCGGucaCAGUCCCG---GAGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 30503 | 0.68 | 0.598199 |
Target: 5'- -aAUUGCCGGgGcCGGGGCCgCGAg- -3' miRNA: 3'- gaUAACGGUCaCaGUCCCGGaGCUgc -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 49443 | 0.68 | 0.58714 |
Target: 5'- ----gGCC-GUGUCGGGGUCgucguccauuUCGGCGg -3' miRNA: 3'- gauaaCGGuCACAGUCCCGG----------AGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 45089 | 0.69 | 0.565145 |
Target: 5'- ----gGCCGGUGuUCGGcGGCCaggucgUCGACGc -3' miRNA: 3'- gauaaCGGUCAC-AGUC-CCGG------AGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 41157 | 0.69 | 0.532585 |
Target: 5'- ---cUGCgAGUGUCAGGGCgagugCGGCc -3' miRNA: 3'- gauaACGgUCACAGUCCCGga---GCUGc -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 2611 | 0.7 | 0.500723 |
Target: 5'- aUcgUGaCCAGgcgcUCGcGGGCCUCGGCGa -3' miRNA: 3'- gAuaAC-GGUCac--AGU-CCCGGAGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 48223 | 0.7 | 0.490288 |
Target: 5'- ----aGCCGGUcgagCGGGGCCUCcGCGg -3' miRNA: 3'- gauaaCGGUCAca--GUCCCGGAGcUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 28543 | 0.71 | 0.449622 |
Target: 5'- ---gUGCCGcUGUUuuGGGCCUCGAUGc -3' miRNA: 3'- gauaACGGUcACAGu-CCCGGAGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 19740 | 0.71 | 0.420375 |
Target: 5'- ---gUGCCGGguacgaagGUCGGcGGCCUCGcCGg -3' miRNA: 3'- gauaACGGUCa-------CAGUC-CCGGAGCuGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 14363 | 0.71 | 0.420375 |
Target: 5'- aUGUUGUCgAGcuUGUCgAGGGCCUCGuCGa -3' miRNA: 3'- gAUAACGG-UC--ACAG-UCCCGGAGCuGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 19446 | 0.72 | 0.365488 |
Target: 5'- ----cGUCGGUGUCGGGGa-UCGGCGg -3' miRNA: 3'- gauaaCGGUCACAGUCCCggAGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 27593 | 0.73 | 0.348325 |
Target: 5'- ---cUGCgCGGUGUgCcgcugguacgAGGGCCUCGACGa -3' miRNA: 3'- gauaACG-GUCACA-G----------UCCCGGAGCUGC- -5' |
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12879 | 5' | -54.6 | NC_003387.1 | + | 40372 | 0.74 | 0.300348 |
Target: 5'- ----gGCCGGggccaAGGGCCUCGACGu -3' miRNA: 3'- gauaaCGGUCacag-UCCCGGAGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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