miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12879 5' -54.6 NC_003387.1 + 1082 1.1 0.000871
Target:  5'- aCUAUUGCCAGUGUCAGGGCCUCGACGg -3'
miRNA:   3'- -GAUAACGGUCACAGUCCCGGAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 2611 0.7 0.500723
Target:  5'- aUcgUGaCCAGgcgcUCGcGGGCCUCGGCGa -3'
miRNA:   3'- gAuaAC-GGUCac--AGU-CCCGGAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 8396 0.83 0.080279
Target:  5'- -aGUUGCgugCGGUGUCGGGGCCUCGcCGg -3'
miRNA:   3'- gaUAACG---GUCACAGUCCCGGAGCuGC- -5'
12879 5' -54.6 NC_003387.1 + 14363 0.71 0.420375
Target:  5'- aUGUUGUCgAGcuUGUCgAGGGCCUCGuCGa -3'
miRNA:   3'- gAUAACGG-UC--ACAG-UCCCGGAGCuGC- -5'
12879 5' -54.6 NC_003387.1 + 16585 0.68 0.631518
Target:  5'- ----cGCCuc-GUCGGGGCucaCUCGACGa -3'
miRNA:   3'- gauaaCGGucaCAGUCCCG---GAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 18997 0.66 0.719598
Target:  5'- ----aGCUGGcGgcguGGGCCUCGACGa -3'
miRNA:   3'- gauaaCGGUCaCagu-CCCGGAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 19446 0.72 0.365488
Target:  5'- ----cGUCGGUGUCGGGGa-UCGGCGg -3'
miRNA:   3'- gauaaCGGUCACAGUCCCggAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 19740 0.71 0.420375
Target:  5'- ---gUGCCGGguacgaagGUCGGcGGCCUCGcCGg -3'
miRNA:   3'- gauaACGGUCa-------CAGUC-CCGGAGCuGC- -5'
12879 5' -54.6 NC_003387.1 + 20023 0.67 0.642638
Target:  5'- ----aGCCcuGUGUCAuguGGGUgUCGACGa -3'
miRNA:   3'- gauaaCGGu-CACAGU---CCCGgAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 23436 0.66 0.719598
Target:  5'- ----cGCCGGggaaCAGGGCgUCGAUGc -3'
miRNA:   3'- gauaaCGGUCaca-GUCCCGgAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 23853 0.68 0.631518
Target:  5'- ----cGCCGcaGUCGGGGCCguggacCGGCGa -3'
miRNA:   3'- gauaaCGGUcaCAGUCCCGGa-----GCUGC- -5'
12879 5' -54.6 NC_003387.1 + 27593 0.73 0.348325
Target:  5'- ---cUGCgCGGUGUgCcgcugguacgAGGGCCUCGACGa -3'
miRNA:   3'- gauaACG-GUCACA-G----------UCCCGGAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 27946 0.67 0.642638
Target:  5'- ----gGCUcG-GUCGGGGCgCUCGGCGu -3'
miRNA:   3'- gauaaCGGuCaCAGUCCCG-GAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 28543 0.71 0.449622
Target:  5'- ---gUGCCGcUGUUuuGGGCCUCGAUGc -3'
miRNA:   3'- gauaACGGUcACAGu-CCCGGAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 30503 0.68 0.598199
Target:  5'- -aAUUGCCGGgGcCGGGGCCgCGAg- -3'
miRNA:   3'- gaUAACGGUCaCaGUCCCGGaGCUgc -5'
12879 5' -54.6 NC_003387.1 + 31037 0.67 0.664839
Target:  5'- ----cGCCgAGgcgGcCAGGGCgUCGGCGa -3'
miRNA:   3'- gauaaCGG-UCa--CaGUCCCGgAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 40372 0.74 0.300348
Target:  5'- ----gGCCGGggccaAGGGCCUCGACGu -3'
miRNA:   3'- gauaaCGGUCacag-UCCCGGAGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 41157 0.69 0.532585
Target:  5'- ---cUGCgAGUGUCAGGGCgagugCGGCc -3'
miRNA:   3'- gauaACGgUCACAGUCCCGga---GCUGc -5'
12879 5' -54.6 NC_003387.1 + 45089 0.69 0.565145
Target:  5'- ----gGCCGGUGuUCGGcGGCCaggucgUCGACGc -3'
miRNA:   3'- gauaaCGGUCAC-AGUC-CCGG------AGCUGC- -5'
12879 5' -54.6 NC_003387.1 + 47211 0.78 0.16322
Target:  5'- ----cGCCGGUGUCGgcauugugguGGGCCUCGGCc -3'
miRNA:   3'- gauaaCGGUCACAGU----------CCCGGAGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.