Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1288 | 3' | -50.8 | NC_001317.1 | + | 4634 | 0.66 | 0.777868 |
|
Target: 5'- gCCAGGCAUUuUCC-GUCCUGAa---- -3' miRNA: 3'- -GGUCUGUAGuAGGuCGGGACUguuua -5' |
|||||||
| 1288 | 3' | -50.8 | NC_001317.1 | + | 20778 | 0.66 | 0.766898 |
|
Target: 5'- gUCGGugGUCAgcggCCauuguGGCUCUGAUAAAUu -3' miRNA: 3'- -GGUCugUAGUa---GG-----UCGGGACUGUUUA- -5' |
|||||||
| 1288 | 3' | -50.8 | NC_001317.1 | + | 4956 | 0.66 | 0.766898 |
|
Target: 5'- gCAGGCGUCAUCCGcGuUUCUG-CAGAUg -3' miRNA: 3'- gGUCUGUAGUAGGU-C-GGGACuGUUUA- -5' |
|||||||
| 1288 | 3' | -50.8 | NC_001317.1 | + | 9192 | 0.67 | 0.698146 |
|
Target: 5'- aCCGGGCGcuUCA-CCAGCUCaGGCAGu- -3' miRNA: 3'- -GGUCUGU--AGUaGGUCGGGaCUGUUua -5' |
|||||||
| 1288 | 3' | -50.8 | NC_001317.1 | + | 12329 | 0.67 | 0.698146 |
|
Target: 5'- aCCuGACcggCGUCCGGCaCUGGCAGu- -3' miRNA: 3'- -GGuCUGua-GUAGGUCGgGACUGUUua -5' |
|||||||
| 1288 | 3' | -50.8 | NC_001317.1 | + | 3577 | 0.67 | 0.696968 |
|
Target: 5'- cCCAGcCGUCGcgcuguuUCCAGCUCUGcACGGu- -3' miRNA: 3'- -GGUCuGUAGU-------AGGUCGGGAC-UGUUua -5' |
|||||||
| 1288 | 3' | -50.8 | NC_001317.1 | + | 21217 | 0.68 | 0.650594 |
|
Target: 5'- -aAGAUAUCAUCUcGCaCCUGAUGGAa -3' miRNA: 3'- ggUCUGUAGUAGGuCG-GGACUGUUUa -5' |
|||||||
| 1288 | 3' | -50.8 | NC_001317.1 | + | 14082 | 1.09 | 0.001242 |
|
Target: 5'- gCCAGACAUCAUCCAGCCCUGACAAAUa -3' miRNA: 3'- -GGUCUGUAGUAGGUCGGGACUGUUUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home