miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 3' -57 NC_003387.1 + 759 0.66 0.620813
Target:  5'- cGGcCACCgcggcagCGACGucgggcAGCUUCUCaGCGAg -3'
miRNA:   3'- -UC-GUGGa------GCUGC------UCGAAGAGcCGCUg -5'
12880 3' -57 NC_003387.1 + 49800 0.66 0.620813
Target:  5'- cGCAgUUCGACGAGagcCUCGcccGCGGCc -3'
miRNA:   3'- uCGUgGAGCUGCUCgaaGAGC---CGCUG- -5'
12880 3' -57 NC_003387.1 + 11652 0.66 0.619719
Target:  5'- cGCcCCUCGAuCGcgucgacAGCggcCUCGGCGAUc -3'
miRNA:   3'- uCGuGGAGCU-GC-------UCGaa-GAGCCGCUG- -5'
12880 3' -57 NC_003387.1 + 27615 0.66 0.61316
Target:  5'- gAGgGCCUCGACGAcaccgaccggcugGCgUUCgacucgugggucaaCGGCGGCg -3'
miRNA:   3'- -UCgUGGAGCUGCU-------------CG-AAGa-------------GCCGCUG- -5'
12880 3' -57 NC_003387.1 + 39596 0.66 0.609883
Target:  5'- cGCACCagcgaggcCGACGAGUggaUCgccgaggUGGCGGCa -3'
miRNA:   3'- uCGUGGa-------GCUGCUCGa--AGa------GCCGCUG- -5'
12880 3' -57 NC_003387.1 + 33207 0.66 0.609883
Target:  5'- cAGCGCaagCG-CGAgGCccgCUCGGCGAUg -3'
miRNA:   3'- -UCGUGga-GCuGCU-CGaa-GAGCCGCUG- -5'
12880 3' -57 NC_003387.1 + 26790 0.66 0.609883
Target:  5'- cAGCaccGCCUCGACGAggccgcGCUgguggUCGGUGAg -3'
miRNA:   3'- -UCG---UGGAGCUGCU------CGAag---AGCCGCUg -5'
12880 3' -57 NC_003387.1 + 5101 0.66 0.609883
Target:  5'- gGGcCAUgUgGGCGAGgUUCUgCGGCGAg -3'
miRNA:   3'- -UC-GUGgAgCUGCUCgAAGA-GCCGCUg -5'
12880 3' -57 NC_003387.1 + 10683 0.66 0.609883
Target:  5'- cGGUcgAUCUUGGCGcccuGGCg-CUCGGCGACc -3'
miRNA:   3'- -UCG--UGGAGCUGC----UCGaaGAGCCGCUG- -5'
12880 3' -57 NC_003387.1 + 43127 0.66 0.608791
Target:  5'- cGGCGCCgcggUGGUGGGCgUUCcugcaccgcacguUCGGCGGCg -3'
miRNA:   3'- -UCGUGGa---GCUGCUCG-AAG-------------AGCCGCUG- -5'
12880 3' -57 NC_003387.1 + 15254 0.66 0.606607
Target:  5'- cGGCACCUuuuggCGGCGcAGCgccgCcagcauggcaaccgUCGGCGGCu -3'
miRNA:   3'- -UCGUGGA-----GCUGC-UCGaa--G--------------AGCCGCUG- -5'
12880 3' -57 NC_003387.1 + 11332 0.66 0.603333
Target:  5'- uGCGCCUCGGuCGcccGGCgcucggccucacgCUCGGCGuCg -3'
miRNA:   3'- uCGUGGAGCU-GC---UCGaa-----------GAGCCGCuG- -5'
12880 3' -57 NC_003387.1 + 38827 0.66 0.603333
Target:  5'- uAGCuggCUCGACGAGCcgccgCagcucaaggcaugaaUCGGCGGCu -3'
miRNA:   3'- -UCGug-GAGCUGCUCGaa---G---------------AGCCGCUG- -5'
12880 3' -57 NC_003387.1 + 11297 0.66 0.598972
Target:  5'- uGCgACCggCGGCGAcaGCggcaagCUCGGCGAg -3'
miRNA:   3'- uCG-UGGa-GCUGCU--CGaa----GAGCCGCUg -5'
12880 3' -57 NC_003387.1 + 8817 0.66 0.595703
Target:  5'- cGCGCCcgaacuuggccguaUCGACGAGCggCUCaccgugcGCGAUg -3'
miRNA:   3'- uCGUGG--------------AGCUGCUCGaaGAGc------CGCUG- -5'
12880 3' -57 NC_003387.1 + 32727 0.66 0.588089
Target:  5'- cGGCGCa-CGGCGcGGUggcCUCGGCGAUu -3'
miRNA:   3'- -UCGUGgaGCUGC-UCGaa-GAGCCGCUG- -5'
12880 3' -57 NC_003387.1 + 38928 0.66 0.588089
Target:  5'- uGGCGCaaCGugGccGCUgaUCUgCGGCGACg -3'
miRNA:   3'- -UCGUGgaGCugCu-CGA--AGA-GCCGCUG- -5'
12880 3' -57 NC_003387.1 + 20460 0.66 0.588089
Target:  5'- -aCGCCUUGuCG-GC--CUCGGCGACg -3'
miRNA:   3'- ucGUGGAGCuGCuCGaaGAGCCGCUG- -5'
12880 3' -57 NC_003387.1 + 20546 0.66 0.588089
Target:  5'- cGCAgCUCGGCGgucAGCUcgucaaUCUgugccugcaggCGGCGGCa -3'
miRNA:   3'- uCGUgGAGCUGC---UCGA------AGA-----------GCCGCUG- -5'
12880 3' -57 NC_003387.1 + 13308 0.66 0.577243
Target:  5'- cGGCgGCCUCGACGgcAGCgacCUgGGCaaGACg -3'
miRNA:   3'- -UCG-UGGAGCUGC--UCGaa-GAgCCG--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.