miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 18216 0.66 0.349332
Target:  5'- gGAUCG-CGGcGCCGCaGCGGCGGgCGu -3'
miRNA:   3'- gCUAGUgGCCcCGGUGgCGCCGUC-GC- -5'
12880 5' -63.2 NC_003387.1 + 1000 0.66 0.349332
Target:  5'- ----gACCGGGGUCggaugcGCUGCGGCcuuGCGu -3'
miRNA:   3'- gcuagUGGCCCCGG------UGGCGCCGu--CGC- -5'
12880 5' -63.2 NC_003387.1 + 21683 0.66 0.349332
Target:  5'- uCGG-CGCCGGugccgugcuGGCCGCCGCccCGGCGc -3'
miRNA:   3'- -GCUaGUGGCC---------CCGGUGGCGccGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 3985 0.66 0.349332
Target:  5'- aCGuUC-CCaGGauugaGGCgGCCGUGGCGGCGa -3'
miRNA:   3'- -GCuAGuGG-CC-----CCGgUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 50179 0.66 0.326134
Target:  5'- gGAUCuGCCGcGGCgACCGCGuGCGGa- -3'
miRNA:   3'- gCUAG-UGGCcCCGgUGGCGC-CGUCgc -5'
12880 5' -63.2 NC_003387.1 + 39094 0.66 0.313505
Target:  5'- aCGGUgGCCGGGuugaacucacccgguGCCAgCGCGgggcugccagacuGCGGCGa -3'
miRNA:   3'- -GCUAgUGGCCC---------------CGGUgGCGC-------------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 40254 0.66 0.31866
Target:  5'- uCGGaCGCCaGGcccgcggccaGGCCGCCGCcagcgaaccucGGCAGCGc -3'
miRNA:   3'- -GCUaGUGG-CC----------CCGGUGGCG-----------CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 26929 0.66 0.326134
Target:  5'- ---cCACCGaGGCCGCCgaGCGGCcgagaaugucgAGCGg -3'
miRNA:   3'- gcuaGUGGCcCCGGUGG--CGCCG-----------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 31006 0.67 0.3041
Target:  5'- aGGUCAggaUC-GGGCCgagcgugcGCCGgGGCGGCGg -3'
miRNA:   3'- gCUAGU---GGcCCCGG--------UGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 25414 0.67 0.30697
Target:  5'- gCGAUCACgGcgacgcggcucucaaGGGCCGCCaguGCGGCGuucuccucgcGCGa -3'
miRNA:   3'- -GCUAGUGgC---------------CCCGGUGG---CGCCGU----------CGC- -5'
12880 5' -63.2 NC_003387.1 + 12477 0.67 0.294215
Target:  5'- aCGGUCacgacgagcugcauGCgGGGGCUGCCGUcgucccaGGuCAGCGg -3'
miRNA:   3'- -GCUAG--------------UGgCCCCGGUGGCG-------CC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 51466 0.67 0.297014
Target:  5'- --cUCGCCGGGGUCcgucgGCUuCGGUGGCGu -3'
miRNA:   3'- gcuAGUGGCCCCGG-----UGGcGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 3406 0.67 0.283227
Target:  5'- gCGAUCAugcUCGGGGCCGugcCCuCGGCgugcucGGCGa -3'
miRNA:   3'- -GCUAGU---GGCCCCGGU---GGcGCCG------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 52223 0.67 0.290056
Target:  5'- gCGGUCGCCacgcGGGcGCgCAUCGCGacgaGCAGCu -3'
miRNA:   3'- -GCUAGUGG----CCC-CG-GUGGCGC----CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 18827 0.67 0.290056
Target:  5'- aGAUCGCCGacGGGUCGCCGCccauguGCAuGUGc -3'
miRNA:   3'- gCUAGUGGC--CCCGGUGGCGc-----CGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 31017 0.67 0.269952
Target:  5'- aGGUCGgCGcGGGCCgcgcucGCCGaGGCGGCc -3'
miRNA:   3'- gCUAGUgGC-CCCGG------UGGCgCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 14627 0.67 0.269952
Target:  5'- aGGUCGCaGGugcccgucaGGCCGCCGCGcacagugacGCGGCGc -3'
miRNA:   3'- gCUAGUGgCC---------CCGGUGGCGC---------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30925 0.67 0.289368
Target:  5'- uCGcUCGCCGaGcuGCCGCCGCGGUcaacuugAGCGc -3'
miRNA:   3'- -GCuAGUGGC-Cc-CGGUGGCGCCG-------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 30503 0.67 0.276526
Target:  5'- -aAUUGCCGGGGCCgggGCCGCGaG-AGCc -3'
miRNA:   3'- gcUAGUGGCCCCGG---UGGCGC-CgUCGc -5'
12880 5' -63.2 NC_003387.1 + 33958 0.67 0.276526
Target:  5'- aGcUUGCCGGGGUCggguaugaGCUGCcGCAGCGg -3'
miRNA:   3'- gCuAGUGGCCCCGG--------UGGCGcCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.