miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 1948 0.71 0.155207
Target:  5'- uGAUCcgGCCGcGGGUCugGCCG-GGCAGCGc -3'
miRNA:   3'- gCUAG--UGGC-CCCGG--UGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 441 0.71 0.163476
Target:  5'- gCGGUUAaguCUGucGCCGCCGCGGCGGCc -3'
miRNA:   3'- -GCUAGU---GGCccCGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 4516 0.71 0.163476
Target:  5'- gGGUCACCucGGCCGCCGCcgccGguGCGg -3'
miRNA:   3'- gCUAGUGGccCCGGUGGCGc---CguCGC- -5'
12880 5' -63.2 NC_003387.1 + 18290 0.7 0.17214
Target:  5'- uCGAccagCGCCGacccGGCCGCgGCGGUGGCGc -3'
miRNA:   3'- -GCUa---GUGGCc---CCGGUGgCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 48788 0.7 0.17214
Target:  5'- aGcUCGCCGcuGaUCGCCGCGGCGGCGg -3'
miRNA:   3'- gCuAGUGGCccC-GGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 4615 0.7 0.17214
Target:  5'- uGAUCGgCGa-GCCACCGCGggcGCAGCGg -3'
miRNA:   3'- gCUAGUgGCccCGGUGGCGC---CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 12404 0.7 0.17214
Target:  5'- gCGAUCAacuCCGGuGcGCCGCUGUGGgAGCu -3'
miRNA:   3'- -GCUAGU---GGCC-C-CGGUGGCGCCgUCGc -5'
12880 5' -63.2 NC_003387.1 + 40508 0.7 0.181211
Target:  5'- gCGAcCGCCGGuGGCCcggcACCGa-GCAGCGa -3'
miRNA:   3'- -GCUaGUGGCC-CCGG----UGGCgcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 10465 0.7 0.18543
Target:  5'- uCGGUCGCCGGuggcauGGCgAUCGCcaagguuGGCAGCa -3'
miRNA:   3'- -GCUAGUGGCC------CCGgUGGCG-------CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 51842 0.7 0.185904
Target:  5'- aGAUCcugACCGGcgucGCUGCCGCGGUGGCc -3'
miRNA:   3'- gCUAG---UGGCCc---CGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 1666 0.7 0.185904
Target:  5'- uCGAggaGgUGuGGGCCgguaccgacACCGCGGCGGCGg -3'
miRNA:   3'- -GCUag-UgGC-CCCGG---------UGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 18685 0.7 0.190703
Target:  5'- uCGAguaCACCGGGGUggggCGCCGUgccgaGGCAGUa -3'
miRNA:   3'- -GCUa--GUGGCCCCG----GUGGCG-----CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 16756 0.69 0.195611
Target:  5'- ---cCGCCGaGGGCCuccucgACCGCGGCcuucGCGg -3'
miRNA:   3'- gcuaGUGGC-CCCGG------UGGCGCCGu---CGC- -5'
12880 5' -63.2 NC_003387.1 + 16090 0.69 0.195611
Target:  5'- gGggCGCCGucGGG-CAUCGCGGCGGCc -3'
miRNA:   3'- gCuaGUGGC--CCCgGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 43099 0.69 0.197605
Target:  5'- aCGggCGCCGGGuacgagcgcgacggcGCggCGCCGCGGUGGUGg -3'
miRNA:   3'- -GCuaGUGGCCC---------------CG--GUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 37779 0.69 0.200629
Target:  5'- cCGAUacCACCGGGGaugCGCCGCugcgccGGUAGCc -3'
miRNA:   3'- -GCUA--GUGGCCCCg--GUGGCG------CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 30613 0.69 0.205758
Target:  5'- ---cCGCCaGGGCCGCCGgGGaUGGCGc -3'
miRNA:   3'- gcuaGUGGcCCCGGUGGCgCC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 46935 0.69 0.205758
Target:  5'- cCGggCACCGaGGuGUCGauCCGCGGCgAGCGc -3'
miRNA:   3'- -GCuaGUGGC-CC-CGGU--GGCGCCG-UCGC- -5'
12880 5' -63.2 NC_003387.1 + 6422 0.69 0.205758
Target:  5'- gCGGUgACUGcGGGCCagGCCGUcgaggucgugGGCGGCGu -3'
miRNA:   3'- -GCUAgUGGC-CCCGG--UGGCG----------CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 8762 0.69 0.211001
Target:  5'- --uUCGCCaugcGGGCCuucGCCguGCGGCGGCGg -3'
miRNA:   3'- gcuAGUGGc---CCCGG---UGG--CGCCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.