miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 40254 0.66 0.31866
Target:  5'- uCGGaCGCCaGGcccgcggccaGGCCGCCGCcagcgaaccucGGCAGCGc -3'
miRNA:   3'- -GCUaGUGG-CC----------CCGGUGGCG-----------CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 48170 0.66 0.316443
Target:  5'- gCGGUCGCgcaGGcgcaGGCCcgcaaggugcccgcACCgGCGGCGGCGg -3'
miRNA:   3'- -GCUAGUGg--CC----CCGG--------------UGG-CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 39094 0.66 0.313505
Target:  5'- aCGGUgGCCGGGuugaacucacccgguGCCAgCGCGgggcugccagacuGCGGCGa -3'
miRNA:   3'- -GCUAgUGGCCC---------------CGGUgGCGC-------------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 19240 0.66 0.311315
Target:  5'- gCGAUCG-CGGGcGCCgACCGCcuCGGCGa -3'
miRNA:   3'- -GCUAGUgGCCC-CGG-UGGCGccGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 24959 0.66 0.311315
Target:  5'- gCGA-CA-CGaGGGCCuCCGCGGUGGUGu -3'
miRNA:   3'- -GCUaGUgGC-CCCGGuGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 26573 0.66 0.311315
Target:  5'- uGAcUCcUCGGGGUCagGCCGCGcgaGCGGCGa -3'
miRNA:   3'- gCU-AGuGGCCCCGG--UGGCGC---CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30881 0.66 0.311315
Target:  5'- gCGGU-AgCGGGGCCAUCGCcGGgaaAGCGu -3'
miRNA:   3'- -GCUAgUgGCCCCGGUGGCG-CCg--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 47186 0.66 0.311315
Target:  5'- uGGUCGCCcucGGGGCUcaggugGCCGcCGGUgucGGCa -3'
miRNA:   3'- gCUAGUGG---CCCCGG------UGGC-GCCG---UCGc -5'
12880 5' -63.2 NC_003387.1 + 25414 0.67 0.30697
Target:  5'- gCGAUCACgGcgacgcggcucucaaGGGCCGCCaguGCGGCGuucuccucgcGCGa -3'
miRNA:   3'- -GCUAGUGgC---------------CCCGGUGG---CGCCGU----------CGC- -5'
12880 5' -63.2 NC_003387.1 + 31006 0.67 0.3041
Target:  5'- aGGUCAggaUC-GGGCCgagcgugcGCCGgGGCGGCGg -3'
miRNA:   3'- gCUAGU---GGcCCCGG--------UGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 49532 0.67 0.3041
Target:  5'- uGcgCuGCUGGuuGGCCuCCGCGGCuGCGa -3'
miRNA:   3'- gCuaG-UGGCC--CCGGuGGCGCCGuCGC- -5'
12880 5' -63.2 NC_003387.1 + 51466 0.67 0.297014
Target:  5'- --cUCGCCGGGGUCcgucgGCUuCGGUGGCGu -3'
miRNA:   3'- gcuAGUGGCCCCGG-----UGGcGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 41057 0.67 0.297014
Target:  5'- gCGAUCGCCGaGGCCGCUGUcgacgcgaucgaGG-GGCGa -3'
miRNA:   3'- -GCUAGUGGCcCCGGUGGCG------------CCgUCGC- -5'
12880 5' -63.2 NC_003387.1 + 12477 0.67 0.294215
Target:  5'- aCGGUCacgacgagcugcauGCgGGGGCUGCCGUcgucccaGGuCAGCGg -3'
miRNA:   3'- -GCUAG--------------UGgCCCCGGUGGCG-------CC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30268 0.67 0.290056
Target:  5'- uCGAgUACCGcGaGGCCaacGCCGCGGCccGCGc -3'
miRNA:   3'- -GCUaGUGGC-C-CCGG---UGGCGCCGu-CGC- -5'
12880 5' -63.2 NC_003387.1 + 52223 0.67 0.290056
Target:  5'- gCGGUCGCCacgcGGGcGCgCAUCGCGacgaGCAGCu -3'
miRNA:   3'- -GCUAGUGG----CCC-CG-GUGGCGC----CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 18827 0.67 0.290056
Target:  5'- aGAUCGCCGacGGGUCGCCGCccauguGCAuGUGc -3'
miRNA:   3'- gCUAGUGGC--CCCGGUGGCGc-----CGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 30925 0.67 0.289368
Target:  5'- uCGcUCGCCGaGcuGCCGCCGCGGUcaacuugAGCGc -3'
miRNA:   3'- -GCuAGUGGC-Cc-CGGUGGCGCCG-------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 43697 0.67 0.289368
Target:  5'- gGAUCGCCGacGGcGCCcgccaggugcucgACgGCGGCAuGCGg -3'
miRNA:   3'- gCUAGUGGC--CC-CGG-------------UGgCGCCGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 3406 0.67 0.283227
Target:  5'- gCGAUCAugcUCGGGGCCGugcCCuCGGCgugcucGGCGa -3'
miRNA:   3'- -GCUAGU---GGCCCCGGU---GGcGCCG------UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.