miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 30061 0.67 0.276526
Target:  5'- aCGAgcgCGCCcugacGGCCGCCGgGGCgAGCa -3'
miRNA:   3'- -GCUa--GUGGcc---CCGGUGGCgCCG-UCGc -5'
12880 5' -63.2 NC_003387.1 + 30503 0.67 0.276526
Target:  5'- -aAUUGCCGGGGCCgggGCCGCGaG-AGCc -3'
miRNA:   3'- gcUAGUGGCCCCGG---UGGCGC-CgUCGc -5'
12880 5' -63.2 NC_003387.1 + 33958 0.67 0.276526
Target:  5'- aGcUUGCCGGGGUCggguaugaGCUGCcGCAGCGg -3'
miRNA:   3'- gCuAGUGGCCCCGG--------UGGCGcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 31017 0.67 0.269952
Target:  5'- aGGUCGgCGcGGGCCgcgcucGCCGaGGCGGCc -3'
miRNA:   3'- gCUAGUgGC-CCCGG------UGGCgCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 49253 0.67 0.269952
Target:  5'- gCGAuuUCACCuc-GCCGCCGCG-CAGCGa -3'
miRNA:   3'- -GCU--AGUGGcccCGGUGGCGCcGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 14627 0.67 0.269952
Target:  5'- aGGUCGCaGGugcccgucaGGCCGCCGCGcacagugacGCGGCGc -3'
miRNA:   3'- gCUAGUGgCC---------CCGGUGGCGC---------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 2527 0.68 0.263505
Target:  5'- uGAgggGCCGGuguuccgcacgcGGUCGCCGCGGCAGa- -3'
miRNA:   3'- gCUag-UGGCC------------CCGGUGGCGCCGUCgc -5'
12880 5' -63.2 NC_003387.1 + 12747 0.68 0.259697
Target:  5'- ---aCACCucGGGGCagUcgaaccucauggaggACCGCGGCAGCGa -3'
miRNA:   3'- gcuaGUGG--CCCCG--G---------------UGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 19058 0.68 0.256558
Target:  5'- uCGAccaUCGCCGccaGGGCCACgGUGaugcccuGCAGCGu -3'
miRNA:   3'- -GCU---AGUGGC---CCCGGUGgCGC-------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 49859 0.68 0.256558
Target:  5'- gGAUCAgCGGGGCgaccuCACCGacgaucaugucguCGGCGuGCGg -3'
miRNA:   3'- gCUAGUgGCCCCG-----GUGGC-------------GCCGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 7177 0.68 0.250986
Target:  5'- ---aCACCGGGGCCGaucaagcggGUGGUGGCGu -3'
miRNA:   3'- gcuaGUGGCCCCGGUgg-------CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 50993 0.68 0.250986
Target:  5'- uCGAUCagcACCGGGaugcGCCGCC-CGGCccgcucAGCGa -3'
miRNA:   3'- -GCUAG---UGGCCC----CGGUGGcGCCG------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 7328 0.68 0.250986
Target:  5'- aCGAUCgGCUcGGGCgGCCGgGcGCAGCu -3'
miRNA:   3'- -GCUAG-UGGcCCCGgUGGCgC-CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 45863 0.68 0.250986
Target:  5'- gCGAgcugCugCGGcuGCgCGCCGCGGCcgAGCGg -3'
miRNA:   3'- -GCUa---GugGCCc-CG-GUGGCGCCG--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 17150 0.68 0.247327
Target:  5'- -uGUCACCGGcGGcCCgcgcugagcuggugcGCCGCcugGGCGGCGa -3'
miRNA:   3'- gcUAGUGGCC-CC-GG---------------UGGCG---CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 25183 0.68 0.244912
Target:  5'- gCGGUCAgCGaGGCuCAuacaggcaaccUCGCGGCGGCGg -3'
miRNA:   3'- -GCUAGUgGCcCCG-GU-----------GGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 49193 0.68 0.244912
Target:  5'- ---cCGCCuGGGGCgGCgGCGGgGGCa -3'
miRNA:   3'- gcuaGUGG-CCCCGgUGgCGCCgUCGc -5'
12880 5' -63.2 NC_003387.1 + 23375 0.68 0.238961
Target:  5'- aGGUCGCCGaGGaugaaGCgCGCGGCGGCu -3'
miRNA:   3'- gCUAGUGGCcCCgg---UG-GCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 12822 0.68 0.233132
Target:  5'- -cGUCGCCGGGGCaGuuGUGGUgaGGCa -3'
miRNA:   3'- gcUAGUGGCCCCGgUggCGCCG--UCGc -5'
12880 5' -63.2 NC_003387.1 + 10741 0.69 0.221831
Target:  5'- uGAgCACCgcGGcGGCCuCCGCGcGCAGCu -3'
miRNA:   3'- gCUaGUGG--CC-CCGGuGGCGC-CGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.