miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 6937 0.71 0.147318
Target:  5'- -cAUCAUCGcGGCCugCGCaGCGGCGg -3'
miRNA:   3'- gcUAGUGGCcCCGGugGCGcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 7177 0.68 0.250986
Target:  5'- ---aCACCGGGGCCGaucaagcggGUGGUGGCGu -3'
miRNA:   3'- gcuaGUGGCCCCGGUgg-------CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 7308 0.73 0.116167
Target:  5'- --cUCGCCGGGGCCGuacCUGuCGGCuGCGc -3'
miRNA:   3'- gcuAGUGGCCCCGGU---GGC-GCCGuCGC- -5'
12880 5' -63.2 NC_003387.1 + 7328 0.68 0.250986
Target:  5'- aCGAUCgGCUcGGGCgGCCGgGcGCAGCu -3'
miRNA:   3'- -GCUAG-UGGcCCCGgUGGCgC-CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 8762 0.69 0.211001
Target:  5'- --uUCGCCaugcGGGCCuucGCCguGCGGCGGCGg -3'
miRNA:   3'- gcuAGUGGc---CCCGG---UGG--CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 10465 0.7 0.18543
Target:  5'- uCGGUCGCCGGuggcauGGCgAUCGCcaagguuGGCAGCa -3'
miRNA:   3'- -GCUAGUGGCC------CCGgUGGCG-------CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 10505 0.66 0.349332
Target:  5'- aGAUCAgCGGGG-CGCU-CGGCucGGCGa -3'
miRNA:   3'- gCUAGUgGCCCCgGUGGcGCCG--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 10609 0.71 0.147318
Target:  5'- aCGGUCGCCucGGUCaugcaggacgcgACCGCGGCGGUGa -3'
miRNA:   3'- -GCUAGUGGccCCGG------------UGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 10741 0.69 0.221831
Target:  5'- uGAgCACCgcGGcGGCCuCCGCGcGCAGCu -3'
miRNA:   3'- gCUaGUGG--CC-CCGGuGGCGC-CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 12204 0.72 0.136169
Target:  5'- aGGUCGCUGcucggugccGGGCCACCGgCGGUcgccAGCGc -3'
miRNA:   3'- gCUAGUGGC---------CCCGGUGGC-GCCG----UCGC- -5'
12880 5' -63.2 NC_003387.1 + 12404 0.7 0.17214
Target:  5'- gCGAUCAacuCCGGuGcGCCGCUGUGGgAGCu -3'
miRNA:   3'- -GCUAGU---GGCC-C-CGGUGGCGCCgUCGc -5'
12880 5' -63.2 NC_003387.1 + 12477 0.67 0.294215
Target:  5'- aCGGUCacgacgagcugcauGCgGGGGCUGCCGUcgucccaGGuCAGCGg -3'
miRNA:   3'- -GCUAG--------------UGgCCCCGGUGGCG-------CC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 12747 0.68 0.259697
Target:  5'- ---aCACCucGGGGCagUcgaaccucauggaggACCGCGGCAGCGa -3'
miRNA:   3'- gcuaGUGG--CCCCG--G---------------UGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 12822 0.68 0.233132
Target:  5'- -cGUCGCCGGGGCaGuuGUGGUgaGGCa -3'
miRNA:   3'- gcUAGUGGCCCCGgUggCGCCG--UCGc -5'
12880 5' -63.2 NC_003387.1 + 13622 0.78 0.04986
Target:  5'- uGG-CACCGGgugaguucaacccGGCCACCGuCGGCGGCGg -3'
miRNA:   3'- gCUaGUGGCC-------------CCGGUGGC-GCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 14080 0.66 0.341471
Target:  5'- uGAUgCGCCGGaacugcagcGCCAgCGCGGCcuGCGg -3'
miRNA:   3'- gCUA-GUGGCCc--------CGGUgGCGCCGu-CGC- -5'
12880 5' -63.2 NC_003387.1 + 14627 0.67 0.269952
Target:  5'- aGGUCGCaGGugcccgucaGGCCGCCGCGcacagugacGCGGCGc -3'
miRNA:   3'- gCUAGUGgCC---------CCGGUGGCGC---------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 16090 0.69 0.195611
Target:  5'- gGggCGCCGucGGG-CAUCGCGGCGGCc -3'
miRNA:   3'- gCuaGUGGC--CCCgGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 16756 0.69 0.195611
Target:  5'- ---cCGCCGaGGGCCuccucgACCGCGGCcuucGCGg -3'
miRNA:   3'- gcuaGUGGC-CCCGG------UGGCGCCGu---CGC- -5'
12880 5' -63.2 NC_003387.1 + 17150 0.68 0.247327
Target:  5'- -uGUCACCGGcGGcCCgcgcugagcuggugcGCCGCcugGGCGGCGa -3'
miRNA:   3'- gcUAGUGGCC-CC-GG---------------UGGCG---CCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.